[Gramene] Cereal root genes

[Victoria Carollo Blake]

Hi Ken,

PlexDB  ( http://www.plexdb.org )  could also be helpful.

Cheers,
Victoria



On Tue, Aug 14, 2012 at 2:01 PM, Dave Matthews <matthews at graingenes.org>wrote:

> Hi Ken,
>
> For barley you could search BLAST hits of EST contigs at HarvVEST,
> http://www.harvest-web.org/hweb/bin/bestkey.wc
>
> and BLAST hits of FLcDNAs at
> http://barleyflc.dna.affrc.go.jp/hvdb/
>
> For cereals I'd suggest Gramene, http://www.gramene.org/rice_mutant/
> and http://www.gramene.org/plant_ontology/
>
> Hi other folks,
>
> Anyone know of other sources to suggest?
>
> Best regards,
> - Dave
>
>
> > Date: Tue, 14 Aug 2012 12:41:15 +0100
> > From: KJG Groom <Ken.Groom at bristol.ac.uk>
> > To: matthews at greengenes.cit.cornell.edu
> > Subject: Cereal root genes
> >
> > Hi Dr Matthews,
> >
> > I've generated a list of potential barley root hair genes through
> > microarray comparison of expression, and I'm trying to check if any of
> them
> > correspond to already known cereal genes.
> >
> > I was wondering if you had any lists of root or root hair genes in any
> > cereal species? I have pulled out various sets by searching RAPDB and
> > plantgdb databases etc for 'root', but I know I'm missing some named
> genes,
> > so I'm probably missing others!
> >
> > Any help would be greatly appreciated!
> >
> > Thanks a lot,
> >
> > Ken
> >
> > ----------------------
> > KJG Groom
> > kg4147 at bristol.ac.uk
>
> -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -
>   -
> David E. Matthews, PhD            USDA-ARS Plant Genome Database Curator
> Cornell University                Email:
> matthews at greengenes.cit.cornell.edu
> Dept. Plant Breeding and Genetics                     Phone:
> +1-607-255-9951
> 409 Bradfield Hall                                      Fax:
> +1-607-255-6683
> Ithaca, New York 14853, USA                   GrainGenes:
> www.graingenes.org
>
>


-- 
Victoria Carollo Blake, Ph.D.
USDA-ARS-WRRC
~~~~~~  ~~~~~~  ~~~~~~
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