Hi Ken,<div><br></div><div>PlexDB ( <a href="http://www.plexdb.org">http://www.plexdb.org</a> ) could also be helpful.</div><div><br></div><div>Cheers, </div><div>Victoria</div><div><br></div><div><br><br><div class="gmail_quote">
On Tue, Aug 14, 2012 at 2:01 PM, Dave Matthews <span dir="ltr"><<a href="mailto:matthews@graingenes.org" target="_blank">matthews@graingenes.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi Ken,<br>
<br>
For barley you could search BLAST hits of EST contigs at HarvVEST,<br>
<a href="http://www.harvest-web.org/hweb/bin/bestkey.wc" target="_blank">http://www.harvest-web.org/hweb/bin/bestkey.wc</a><br>
<br>
and BLAST hits of FLcDNAs at<br>
<a href="http://barleyflc.dna.affrc.go.jp/hvdb/" target="_blank">http://barleyflc.dna.affrc.go.jp/hvdb/</a><br>
<br>
For cereals I'd suggest Gramene, <a href="http://www.gramene.org/rice_mutant/" target="_blank">http://www.gramene.org/rice_mutant/</a><br>
and <a href="http://www.gramene.org/plant_ontology/" target="_blank">http://www.gramene.org/plant_ontology/</a><br>
<br>
Hi other folks,<br>
<br>
Anyone know of other sources to suggest?<br>
<br>
Best regards,<br>
- Dave<br>
<br>
<br>
> Date: Tue, 14 Aug 2012 12:41:15 +0100<br>
> From: KJG Groom <<a href="mailto:Ken.Groom@bristol.ac.uk">Ken.Groom@bristol.ac.uk</a>><br>
> To: <a href="mailto:matthews@greengenes.cit.cornell.edu">matthews@greengenes.cit.cornell.edu</a><br>
> Subject: Cereal root genes<br>
><br>
> Hi Dr Matthews,<br>
><br>
> I've generated a list of potential barley root hair genes through<br>
> microarray comparison of expression, and I'm trying to check if any of them<br>
> correspond to already known cereal genes.<br>
><br>
> I was wondering if you had any lists of root or root hair genes in any<br>
> cereal species? I have pulled out various sets by searching RAPDB and<br>
> plantgdb databases etc for 'root', but I know I'm missing some named genes,<br>
> so I'm probably missing others!<br>
><br>
> Any help would be greatly appreciated!<br>
><br>
> Thanks a lot,<br>
><br>
> Ken<br>
><br>
> ----------------------<br>
> KJG Groom<br>
> <a href="mailto:kg4147@bristol.ac.uk">kg4147@bristol.ac.uk</a><br>
<br>
- - - - - - - - - - - - - - - - - - - -<br>
David E. Matthews, PhD USDA-ARS Plant Genome Database Curator<br>
Cornell University Email: <a href="mailto:matthews@greengenes.cit.cornell.edu">matthews@greengenes.cit.cornell.edu</a><br>
Dept. Plant Breeding and Genetics Phone: <a href="tel:%2B1-607-255-9951" value="+16072559951">+1-607-255-9951</a><br>
409 Bradfield Hall Fax: <a href="tel:%2B1-607-255-6683" value="+16072556683">+1-607-255-6683</a><br>
Ithaca, New York 14853, USA GrainGenes: <a href="http://www.graingenes.org" target="_blank">www.graingenes.org</a><br>
<br>
</blockquote></div><br><br clear="all"><div><br></div>-- <br>Victoria Carollo Blake, Ph.D.<br>USDA-ARS-WRRC<br>~~~~~~ ~~~~~~ ~~~~~~<br><br>
</div>