[Gramene] Cereal root genes

[Schaeffer, Mary L.]

Another resource is the Kaeppler maize gene atlas, but has primary root
from seedling only. Can be found as a track on the MaizeGDB genome
browser, and you may blast at the MaizeGDB to get there, using multiple
sequences up to 10,000 kb total length.

-mary
-- 
Mary Schaeffer (Polacco)  PhD
USDA ARS MaizeGDB Curator
Adj Assoc Prof Div Plant Sciences
203 Curtis Hall
University of Missouri 65211
Ph 573 884 7873






On 8/14/12 4:01 PM, "Dave Matthews" <matthews at graingenes.org> wrote:

>Hi Ken,
>
>For barley you could search BLAST hits of EST contigs at HarvVEST,
>http://www.harvest-web.org/hweb/bin/bestkey.wc
>
>and BLAST hits of FLcDNAs at
>http://barleyflc.dna.affrc.go.jp/hvdb/
>
>For cereals I'd suggest Gramene, http://www.gramene.org/rice_mutant/
>and http://www.gramene.org/plant_ontology/
>
>Hi other folks,
>
>Anyone know of other sources to suggest?
>
>Best regards,
>- Dave
>
>
>> Date: Tue, 14 Aug 2012 12:41:15 +0100
>> From: KJG Groom <Ken.Groom at bristol.ac.uk>
>> To: matthews at greengenes.cit.cornell.edu
>> Subject: Cereal root genes
>> 
>> Hi Dr Matthews,
>> 
>> I've generated a list of potential barley root hair genes through
>> microarray comparison of expression, and I'm trying to check if any of
>>them 
>> correspond to already known cereal genes.
>> 
>> I was wondering if you had any lists of root or root hair genes in any
>> cereal species? I have pulled out various sets by searching RAPDB and
>> plantgdb databases etc for 'root', but I know I'm missing some named
>>genes, 
>> so I'm probably missing others!
>> 
>> Any help would be greatly appreciated!
>> 
>> Thanks a lot,
>> 
>> Ken
>> 
>> ----------------------
>> KJG Groom
>> kg4147 at bristol.ac.uk
>
>-   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -
>  -
>David E. Matthews, PhD            USDA-ARS Plant Genome Database Curator
>Cornell University                Email:
>matthews at greengenes.cit.cornell.edu
>Dept. Plant Breeding and Genetics                     Phone:
>+1-607-255-9951 
>409 Bradfield Hall                                      Fax:
>+1-607-255-6683
>Ithaca, New York 14853, USA                   GrainGenes:
>www.graingenes.org
>
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