[Gramene] Cereal root genes

[Dave Matthews]

Hi Ken,

For barley you could search BLAST hits of EST contigs at HarvVEST,
http://www.harvest-web.org/hweb/bin/bestkey.wc

and BLAST hits of FLcDNAs at 
http://barleyflc.dna.affrc.go.jp/hvdb/

For cereals I'd suggest Gramene, http://www.gramene.org/rice_mutant/
and http://www.gramene.org/plant_ontology/

Hi other folks,

Anyone know of other sources to suggest?

Best regards,
- Dave


> Date: Tue, 14 Aug 2012 12:41:15 +0100
> From: KJG Groom <Ken.Groom at bristol.ac.uk>
> To: matthews at greengenes.cit.cornell.edu
> Subject: Cereal root genes
> 
> Hi Dr Matthews,
> 
> I've generated a list of potential barley root hair genes through 
> microarray comparison of expression, and I'm trying to check if any of them 
> correspond to already known cereal genes.
> 
> I was wondering if you had any lists of root or root hair genes in any 
> cereal species? I have pulled out various sets by searching RAPDB and 
> plantgdb databases etc for 'root', but I know I'm missing some named genes, 
> so I'm probably missing others!
> 
> Any help would be greatly appreciated!
> 
> Thanks a lot,
> 
> Ken
> 
> ----------------------
> KJG Groom
> kg4147 at bristol.ac.uk

-   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -
David E. Matthews, PhD            USDA-ARS Plant Genome Database Curator
Cornell University                Email: matthews at greengenes.cit.cornell.edu
Dept. Plant Breeding and Genetics                     Phone: +1-607-255-9951 
409 Bradfield Hall                                      Fax: +1-607-255-6683
Ithaca, New York 14853, USA                   GrainGenes: www.graingenes.org