[Gmod-help] How to add a histogram microarray expression data

[Dave Clements, GMOD Help Desk]

Dear Tony,

I don't know for sure when support for microarray intensity histograms was
added to GBrowse.  However, I do know that
1.69, which is available from CVS, but hasn't been officially released yet,
adds support for all kinds of quantitative data, so I believe it is likely
that the historgrams were added since 1.68.

Regardless, 1.69 has many new features, and we recommend upgrading to it.

Regards,

Dave Clements
GMOD Help Desk

On Thu, Jul 24, 2008 at 5:38 AM, tony KAOMA MUKENDI <
tkaomamuken at jouy.inra.fr> wrote:

> Dear Dave,
>
> Thank you very much for your answer. It's what I'm looking for. I use
> gbrowse-1.68. I followed instructions of
> http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric.
> Unfortunately, it still does not run.
> It is perhaps cause by the version of gbrowse(www.wormbase.org <
> http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric>
> uses gbrowse-1.69). what do you think about?
>
> Best Regards,
>
> Tony KAOMA
>
> Dave Clements, GMOD Help Desk a écrit :
>
>> Tony,
>>
>> http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric
>>
>> describes how to show a microarray intensity historgram in GBrowse.  Is
>> this what you are looking for?
>>
>> You can also show microarray intensity with wiggle tracks.  See
>>
>>
>> http://gmod.org/wiki/index.php/GBrowse_Configuration_HOWTO#Quantitative_Data
>>
>> Please let me know if this is not what you are looking for, or if you have
>> further questions.
>>
>> Regards,
>>
>> Dave Clements
>> GMOD HELP Desk
>>
>> On Fri, Jul 18, 2008 at 3:38 AM, tony KAOMA MUKENDI <
>> tkaomamuken at jouy.inra.fr <mailto:tkaomamuken at jouy.inra.fr>> wrote:
>>
>>    Dear all,
>>
>>    Can you help me please?
>>
>>    I would like to add a graphic like histogram to represent
>>    microarray expression data. I don't know what kinde of plugin use.
>>    My data are store in data base Chado model. Using a  plugin
>>    annotaror and a Gbrowse's track, I can load expression data during
>>    a Gbrowse's search but
>>    I don't know what I cant do for draw a histogram and add it to
>>    Gbrowse's detail panel.
>>
>>    Best Regards
>>
>>    Tony KAOMA
>>
>>
>>
>>
>> --
>> Was this helpful? Let us know at http://gmod.org/Help_Desk_Feedback
>>
>
>


-- 
Was this helpful? Let us know at http://gmod.org/Help_Desk_Feedback
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://brie4.cshl.edu/pipermail/gmod-help/attachments/20080724/b912aecf/attachment.html>