<div dir="ltr">Dear Tony,<br><br>I don't know for sure when support for microarray intensity histograms was added to GBrowse. However, I do know that <br>1.69, which is available from CVS, but hasn't been officially released yet, adds support for all kinds of quantitative data, so I believe it is likely that the historgrams were added since 1.68.<br>
<br>Regardless, 1.69 has many new features, and we recommend upgrading to it.<br><br>Regards,<br><br>Dave Clements<br>GMOD Help Desk<br><br><div class="gmail_quote">On Thu, Jul 24, 2008 at 5:38 AM, tony KAOMA MUKENDI <<a href="mailto:tkaomamuken@jouy.inra.fr">tkaomamuken@jouy.inra.fr</a>> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Dear Dave,<br>
<br>
Thank you very much for your answer. It's what I'm looking for. I use gbrowse-1.68. I followed instructions of<br>
<a href="http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric" target="_blank">http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric</a>. Unfortunately, it still does not run.<br>
It is perhaps cause by the version of gbrowse(<a href="http://www.wormbase.org" target="_blank">www.wormbase.org</a> <<a href="http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric" target="_blank">http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric</a>> uses gbrowse-1.69). what do you think about?<br>
<br>
Best Regards,<br>
<br>
Tony KAOMA<br>
<br>
Dave Clements, GMOD Help Desk a écrit :<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="Ih2E3d">
Tony,<br>
<br>
<a href="http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric" target="_blank">http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric</a><br>
<br>
describes how to show a microarray intensity historgram in GBrowse. Is this what you are looking for?<br>
<br>
You can also show microarray intensity with wiggle tracks. See<br>
<br>
<a href="http://gmod.org/wiki/index.php/GBrowse_Configuration_HOWTO#Quantitative_Data" target="_blank">http://gmod.org/wiki/index.php/GBrowse_Configuration_HOWTO#Quantitative_Data</a><br>
<br>
Please let me know if this is not what you are looking for, or if you have further questions.<br>
<br>
Regards,<br>
<br>
Dave Clements<br>
GMOD HELP Desk<br>
<br></div><div class="Ih2E3d">
On Fri, Jul 18, 2008 at 3:38 AM, tony KAOMA MUKENDI <<a href="mailto:tkaomamuken@jouy.inra.fr" target="_blank">tkaomamuken@jouy.inra.fr</a> <mailto:<a href="mailto:tkaomamuken@jouy.inra.fr" target="_blank">tkaomamuken@jouy.inra.fr</a>>> wrote:<br>
<br>
Dear all,<br>
<br>
Can you help me please?<br>
<br>
I would like to add a graphic like histogram to represent<br>
microarray expression data. I don't know what kinde of plugin use.<br>
My data are store in data base Chado model. Using a plugin<br>
annotaror and a Gbrowse's track, I can load expression data during<br>
a Gbrowse's search but<br>
I don't know what I cant do for draw a histogram and add it to<br>
Gbrowse's detail panel.<br>
<br>
Best Regards<br>
<br>
Tony KAOMA<br>
<br>
<br>
<br>
<br>
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