[Gmod-help] How to add a histogram microarray expression data

[tony KAOMA MUKENDI]

Dear Dave,

It's working now. Problem came from server and not from gbrowse.

Thank you!

Dave Clements, GMOD Help Desk a écrit :
> Dear Tony,
>
> I don't know for sure when support for microarray intensity histograms 
> was added to GBrowse.  However, I do know that
> 1.69, which is available from CVS, but hasn't been officially released 
> yet, adds support for all kinds of quantitative data, so I believe it 
> is likely that the historgrams were added since 1.68.
>
> Regardless, 1.69 has many new features, and we recommend upgrading to it.
>
> Regards,
>
> Dave Clements
> GMOD Help Desk
>
> On Thu, Jul 24, 2008 at 5:38 AM, tony KAOMA MUKENDI 
> <tkaomamuken at jouy.inra.fr <mailto:tkaomamuken at jouy.inra.fr>> wrote:
>
>     Dear Dave,
>
>     Thank you very much for your answer. It's what I'm looking for. I
>     use gbrowse-1.68. I followed instructions of
>     http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric.
>     Unfortunately, it still does not run.
>     It is perhaps cause by the version of gbrowse(www.wormbase.org
>     <http://www.wormbase.org>
>     <http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric>
>     uses gbrowse-1.69). what do you think about?
>
>     Best Regards,
>
>     Tony KAOMA
>
>     Dave Clements, GMOD Help Desk a écrit :
>
>         Tony,
>
>         http://www.wormbase.org/db/seq/gbrowse/briggsae/?help=annotation#numeric
>
>         describes how to show a microarray intensity historgram in
>         GBrowse.  Is this what you are looking for?
>
>         You can also show microarray intensity with wiggle tracks.  See
>
>         http://gmod.org/wiki/index.php/GBrowse_Configuration_HOWTO#Quantitative_Data
>
>         Please let me know if this is not what you are looking for, or
>         if you have further questions.
>
>         Regards,
>
>         Dave Clements
>         GMOD HELP Desk
>
>         On Fri, Jul 18, 2008 at 3:38 AM, tony KAOMA MUKENDI
>         <tkaomamuken at jouy.inra.fr <mailto:tkaomamuken at jouy.inra.fr>
>         <mailto:tkaomamuken at jouy.inra.fr
>         <mailto:tkaomamuken at jouy.inra.fr>>> wrote:
>
>            Dear all,
>
>            Can you help me please?
>
>            I would like to add a graphic like histogram to represent
>            microarray expression data. I don't know what kinde of
>         plugin use.
>            My data are store in data base Chado model. Using a  plugin
>            annotaror and a Gbrowse's track, I can load expression data
>         during
>            a Gbrowse's search but
>            I don't know what I cant do for draw a histogram and add it to
>            Gbrowse's detail panel.
>
>            Best Regards
>
>            Tony KAOMA
>
>
>
>
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