[Sciapps-support] ERROR RUNNING bcftools_call-1.8

[AA AA]

Ok, thank you. I decided to run the alignment again to see where the error
is  coming from. I would keep you posted.

On Mon, Nov 30, 2020, 9:36 AM Wang, Liya <wangli at cshl.edu> wrote:

> Hi Dayo,
>
> I checked the error file and the problem is that the bam alignment file is
> corrupted. It could be a server error or alignment took over the 48 hours
> limit of TACC cluster. If it is due to a server error, you can rerun the
> alignment step.
>
> Regards,
> Liya
>
> > On Nov 30, 2020, at 4:03 AM, AA AA <adeyanjuadedayo at gmail.com> wrote:
> >
> > Hi,
> >
> > I am having errors trying to call variants. I have attached the error
> files for you to look at.
> > Thanks.
> > Dayo.
> >
> <agave.log><job-for-bcftools_call-1-8-e553353b-b5cd-4c0e-bfe5-e103359c4ad9-007.err><job-for-bcftools_call-1-8-e553353b-b5cd-4c0e-bfe5-e103359c4ad9-007.out>
>
>
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