[Sciapps-support] ERROR RUNNING bcftools_call-1.8

[Wang, Liya]

Hi Dayo,

I checked the error file and the problem is that the bam alignment file is corrupted. It could be a server error or alignment took over the 48 hours limit of TACC cluster. If it is due to a server error, you can rerun the alignment step.

Regards,
Liya

> On Nov 30, 2020, at 4:03 AM, AA AA <adeyanjuadedayo at gmail.com> wrote:
> 
> Hi,
> 
> I am having errors trying to call variants. I have attached the error files for you to look at.
> Thanks.
> Dayo.
> <agave.log><job-for-bcftools_call-1-8-e553353b-b5cd-4c0e-bfe5-e103359c4ad9-007.err><job-for-bcftools_call-1-8-e553353b-b5cd-4c0e-bfe5-e103359c4ad9-007.out>