<div dir="auto">Ok, thank you. I decided to run the alignment again to see where the error is coming from. I would keep you posted.</div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Nov 30, 2020, 9:36 AM Wang, Liya <<a href="mailto:wangli@cshl.edu">wangli@cshl.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Dayo,<br>
<br>
I checked the error file and the problem is that the bam alignment file is corrupted. It could be a server error or alignment took over the 48 hours limit of TACC cluster. If it is due to a server error, you can rerun the alignment step.<br>
<br>
Regards,<br>
Liya<br>
<br>
> On Nov 30, 2020, at 4:03 AM, AA AA <<a href="mailto:adeyanjuadedayo@gmail.com" target="_blank" rel="noreferrer">adeyanjuadedayo@gmail.com</a>> wrote:<br>
> <br>
> Hi,<br>
> <br>
> I am having errors trying to call variants. I have attached the error files for you to look at.<br>
> Thanks.<br>
> Dayo.<br>
> <agave.log><job-for-bcftools_call-1-8-e553353b-b5cd-4c0e-bfe5-e103359c4ad9-007.err><job-for-bcftools_call-1-8-e553353b-b5cd-4c0e-bfe5-e103359c4ad9-007.out><br>
<br>
</blockquote></div>