[Obo-cell-type] Annotations to cell types (using OBO-Cell)

[Chris Mungall]

Why not add links to CL from PO as xrefs? This will help keep the two  
ontologies in sync, see
http://www.bioontology.org/wiki/index.php/CL:Aligning_species- 
specific_anatomy_ontologies_with_CL

See attached for a first pass at some automated mappings

Hmm, according to OBO-Cell, zygote (CL:0000365) is both a plant and  
animal cell!

I think the PO<->CL coordination effort could do with revisiting...

On Jan 15, 2007, at 3:58 PM, Sue Rhee wrote:

> Chris,
>
> The Plant Ontology has a number of cell types under its Plant  
> Structure branch and I think (though someone should confirm) that  
> the Cell Type ontology's plant cell type terms have PO IDs as  
> secondary IDs. Actually I think that this should be made  
> bidirectional but am not sure if the PO terms have CT IDs as  
> secondary IDs. In any case, there are 264 annotations to terms  
> under plant cell, which are downloadable from the PO website  
> (www.plantontology.org).
>
> Sue
>
> Chris Mungall wrote:
>> Is anyone aware of downloadable annotations to CL IDs? I know  
>> that  MGI provide cell type localisation info as qualifiers to  
>> their GO  annotations; this will be available through AmiGO  
>> sometime this year.
>> There is also the FlyBase/ZFIN/NCBO phenotype annotations, many  
>> of  which are described as qualities borne by types of cell (eg   
>> spermatocyte lacks asters)
>> EVOC provides associations to dbEST libraries.
>> Any others?
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>