[Obo-cell-type] Annotations to cell types (using OBO-Cell)
Sue Rhee
rhee at acoma.Stanford.EDU
Mon Jan 15 18:58:47 EST 2007
Chris,
The Plant Ontology has a number of cell types under its Plant Structure
branch and I think (though someone should confirm) that the Cell Type
ontology's plant cell type terms have PO IDs as secondary IDs. Actually
I think that this should be made bidirectional but am not sure if the PO
terms have CT IDs as secondary IDs. In any case, there are 264
annotations to terms under plant cell, which are downloadable from the
PO website (www.plantontology.org).
Sue
Chris Mungall wrote:
> Is anyone aware of downloadable annotations to CL IDs? I know that
> MGI provide cell type localisation info as qualifiers to their GO
> annotations; this will be available through AmiGO sometime this year.
>
> There is also the FlyBase/ZFIN/NCBO phenotype annotations, many of
> which are described as qualities borne by types of cell (eg
> spermatocyte lacks asters)
>
> EVOC provides associations to dbEST libraries.
>
> Any others?
>
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