[Obo-cell-type] Annotations to cell types (using OBO-Cell)

[Chris Mungall]

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On Jan 16, 2007, at 7:31 AM, Chris Mungall wrote:

>
> Why not add links to CL from PO as xrefs? This will help keep the two
> ontologies in sync, see
> http://www.bioontology.org/wiki/index.php/CL:Aligning_species-
> specific_anatomy_ontologies_with_CL
>
> See attached for a first pass at some automated mappings
>
> Hmm, according to OBO-Cell, zygote (CL:0000365) is both a plant and
> animal cell!
>
> I think the PO<->CL coordination effort could do with revisiting...
>
> On Jan 15, 2007, at 3:58 PM, Sue Rhee wrote:
>
>> Chris,
>>
>> The Plant Ontology has a number of cell types under its Plant
>> Structure branch and I think (though someone should confirm) that
>> the Cell Type ontology's plant cell type terms have PO IDs as
>> secondary IDs. Actually I think that this should be made
>> bidirectional but am not sure if the PO terms have CT IDs as
>> secondary IDs. In any case, there are 264 annotations to terms
>> under plant cell, which are downloadable from the PO website
>> (www.plantontology.org).
>>
>> Sue
>>
>> Chris Mungall wrote:
>>> Is anyone aware of downloadable annotations to CL IDs? I know
>>> that  MGI provide cell type localisation info as qualifiers to
>>> their GO  annotations; this will be available through AmiGO
>>> sometime this year.
>>> There is also the FlyBase/ZFIN/NCBO phenotype annotations, many
>>> of  which are described as qualities borne by types of cell (eg
>>> spermatocyte lacks asters)
>>> EVOC provides associations to dbEST libraries.
>>> Any others?
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>>
>
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