Presentations at the ASPB meeting
Christophe Tissier
christophetissier at gmail.com
Fri Feb 9 12:08:58 EST 2007
sounds fine by me.
Sure if you want a slot to talk about RiceCyc in the now-first session, it's
yours.
Chris
On 2/9/07, Pankaj Jaiswal <pj37 at cornell.edu> wrote:
>
> I would go for session 2 (ontology, pathway and ath-genome) before the
> one on dbs because we will mention about these thing sin our db talks.
> Doing these first will cover a lot of background.
>
> rest is fine. I can do PO ~20 min, Gramene ~40 min and lets say a 5-10
> in pathway if we can split.
>
> -pankaj
>
> Christophe Tissier wrote:
>
> > hi Pankaj,
> >
> > no, there are two sessions. We think that GO deserves more than 20minA
> > whole one will be dedicated to GO+PO+ Metabolic pathways.
> > There are going to be 4h altogether.
> > Session 1 (2h)
> > introduction to all the DBs:
> > 40min each including whatever question time you see fit for your own DB.
> > If you think 40min is too much for your DB, I'm sure we can reallocate
> > to time for other things. Do let me know.
> >
> > Session 2 (2h)
> > GO+PO (45-50min)
> > Metabolic pathways (30min)
> > TAIR genome update (30min)
> > Do let me know if you intend to participate in this session (if so
> > provide me with an outline of your presentation... couple of lines will
> > suffice. Pankaj, do you want to cover PO?).
> >
> > Now I guess if you intend to talk about the use of GO in your DB intro,
> > we could have the session order reversed. Although we can just as well
> > mention GO during the talk and introduced the GO talk for those
> > interested. I don't think the order is that critical so if you have
> > preferences we can definitely consider it.
> >
> > I hope this clarifies things.
> >
> > oh, by the way, talking to Wendy (one of the ASPB meeting coordinators),
> > this sessions do NOT fall under the Minisymposium category but
> > workshops. As such I don't think there is a need for posters. We are
> > making arrangement directly with the committee and are bypassing the
> > whole abstract submission thing via the web. If you want a separate slot
> > for your DB on very specialized topics, you might want to consider
> > submitting an abstract under the Botany Format
> > <http://www.2007.botanyconference.org/2007Calls/CallforAbstracts2007.pdf
> >,
> > which also does not require a poster. Or contact Wendy to see where you
> > presentation would fit best.
> >
> > If you could all provide me with a very rough dribble on what you intend
> > to talk about during the intro session. I need to email Wendy our draft
> > by monday, so please send it today or at the latest tomorrow morning.
> > Thank you very much.
> >
> > Christophe
> >
> > On 2/9/07, Pankaj Jaiswal <pj37 at cornell.edu <mailto:pj37 at cornell.edu>>
> > wrote:
> >
> > Hi Christophe,
> >
> > I think the 2hr session is shaping up something like this
> >
> > 20 min-TAIR
> > 20 min-SGN
> > 20 min-Gramene
> > 20 min-Ontologies (GO + PO)--> I suggest adding PO
> > 20 min-Plant metabolic pathways
> > 20 min-Questions and discussion.
> > You can split this 20 min as 5 min after each presentation
> for
> > questions and changeover of the speaker or everything
> towards
> > the end.
> >
> > -Pankaj
> >
> > Christophe Tissier wrote:
> >
> > > Hi Claire,
> > >
> > > thanks for the emails.
> > > MaizeGDB can't make it, so it will be TAIR, SGN and Gramene
> > together for
> > > the introductory session.
> > > As mentioned before, we would hopefully follow up on a second
> > session
> > > focusing on Gene Ontology and MetaCyc (we will probably introduce
> > AraCyc
> > > and we could do the same for RiceCyc unless Pankaj wants to do it
> > > himself. As for you Lukas, I am not sure whether you want to talk
> > about
> > > the Cyc you're putting together. It's still in beta, right? not
> been
> > > released to the general public? Overall we think we'll keep the
> > MetaCyc
> > > part short and sweet).
> > > After discussion, I think we're not going to have a third session
> > for
> > > TAIR. We would squeeze 20min of updates on our new genome release
> > in the
> > > second session.
> > >
> > > I have contacted the organizers of the ASPB meeting (I am sorting
> out
> > > the details for rooms etc. Do let me know if you're going to have
> > some
> > > specific requirements for your presentation other than Powerpoint
> > > usuals, laser pointer...). We will need to submit an abstract for
> > each
> > > session. Although TAIR will fully take care of session 2, it
> > would be
> > > nice if you could send me a short description of what you want to
> > talk
> > > about. I will draft an abstract merging all your comments. It
> > would be
> > > great if you could send me this by tomorrow.
> > >
> > > Thanks
> > >
> > > Christophe
> > >
> > >
> > > On 2/8/07, Claire Elise Hebbard <cer17 at cornell.edu
> > <mailto:cer17 at cornell.edu>
> > > <mailto:cer17 at cornell.edu <mailto:cer17 at cornell.edu>>> wrote:
> > >
> > > Hi, Christophe,
> > >
> > > Thanks for initiating this group effort. Yes, Gramene is
> > planning to
> > > attend, and we are interested in a presentation.
> > >
> > > Pankaj Jaiswal will be the most likely person to be attending
> > and
> > > presenting. Ideally, we would also like a one hour slot.
> > >
> > > I will confirm this with Pankaj and ask him to work on
> > submitting an
> > > abstract. We would appreciate your working with the
> > organizers to
> > > try to
> > > group the DB presentations together, and for your
> > presentation to go
> > > first
> > > since you will be presenting the GO and Metacyc.
> > >
> > > You can contact Pankaj ( pj37 at cornell.edu
> > <mailto:pj37 at cornell.edu> <mailto:pj37 at cornell.edu
> > <mailto:pj37 at cornell.edu>>)
> > > or myself directly concerning
> > > anything else we should know for this coordination.
> > >
> > > Sincerely,
> > >
> > > Claire Hebbard
> > > Gramene Outreach
> > > cer17 at cornell.edu <mailto:cer17 at cornell.edu>
> > <mailto:cer17 at cornell.edu <mailto:cer17 at cornell.edu>>
> > >
> > >
> > >
> > > > Hi,
> > > >
> > > > I am contacting you on behalf of TAIR.
> > > > We are planning on going to the ASPB meeting in Chicago
> > next July
> > > and
> > > > wondered whether you had any intentions on attending.
> > > > This year, TAIR (Harmut Foerster, Tanya Berardini and
> > myself) and SGN
> > > > (Lukas
> > > > Muller) are planning on a joint session that would
> introduce
> > > several plant
> > > > DBs and wondered whether you would be interested in
> > sharing a slot.
> > > > The idea would be to have a 2h slot to present our
> > databases (we're
> > > > planning
> > > > on maybe four DBs, which would be roughly 30min
> presentations
> > > including
> > > > questions).
> > > >
> > > > TAIR would be happy to run a full session on GO (what its
> > purpose
> > > is and
> > > > its
> > > > applications) and probably MetaCyc.
> > > > We thought it would make sense to have one DB covering
> these
> > > topics to
> > > > avoid
> > > > having to repeat the same info everytime.
> > > >
> > > > Each DB could thereafter have its own, more in-depth
> session.
> > > TAIR would
> > > > like to plan on a one hour presentation but we could be
> > happy to
> > > share a
> > > > 2h
> > > > slot with another DB. The other two could share another
> > (assuming
> > > that one
> > > > hour is sufficient). In any case, it would probably help
> > if we'd
> > > > synchronize
> > > > our efforts to avoid all having minisymposia at the same
> > time and to
> > > > maximize exposure.
> > > >
> > > > If you have not already completed yours, the deadline for
> > > submission of
> > > > the
> > > > minisymposia abstract is february 14th.
> > > > Do let me know if this sounds interesting to you and I can
> > start
> > > > contacting
> > > > the ASPB organizers for book some slots and send some
> > abstracts.
> > > >
> > > > Best regards,
> > > >
> > > > Christophe
> > > > --
> > > > Dr Christophe Tissier
> > MetaCyc:
> > > > http://www.metacyc.org/
> > > > MetaCyc/TAIR Curator
> AraCyc:
> > > > http://www.arabidopsis.org/tools/aracyc/
> > > <http://www.arabidopsis.org/tools/aracyc/>
> > > > Carnegie Institution of Washington tel +1
> > 650 325
> > > 1521
> > > > x267
> > > > Stanford
> > University fax +1
> > > 650 325
> > > > 6857
> > > > Stanford, CA94305
> > > > USA
> > > >
> > >
> > >
> > >
> > >
> > >
> > > --
> > > Dr Christophe Tissier MetaCyc:
> > > http://www.metacyc.org/
> > > MetaCyc/TAIR Curator AraCyc:
> > > http://www.arabidopsis.org/tools/aracyc/
> > > Carnegie Institution of Washington tel +1 650 325
> > 1521 x267
> > > Stanford University fax +1
> > 650 325
> > > 6857
> > > Stanford, CA94305
> > > USA
> >
> >
> >
> >
> > --
> > Dr Christophe Tissier MetaCyc:
> > http://www.metacyc.org/ <http://www.metacyc.org/>
> > MetaCyc/TAIR Curator AraCyc:
> > http://www.arabidopsis.org/tools/aracyc/
> > Carnegie Institution of Washington tel +1 650 325 1521
> x267
> > Stanford University fax +1 650 325
> > 6857
> > Stanford, CA94305
> > USA
>
>
--
Dr Christophe Tissier MetaCyc:
http://www.metacyc.org/
MetaCyc/TAIR Curator AraCyc:
http://www.arabidopsis.org/tools/aracyc/
Carnegie Institution of Washington tel +1 650 325 1521 x267
Stanford University fax +1 650 325
6857
Stanford, CA94305
USA
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