sounds fine by me.<br>Sure if you want a slot to talk about RiceCyc in the now-first session, it's yours.<br><br>Chris<br><br><div><span class="gmail_quote">On 2/9/07, <b class="gmail_sendername">Pankaj Jaiswal</b> <
<a href="mailto:pj37@cornell.edu">pj37@cornell.edu</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">I would go for session 2 (ontology, pathway and ath-genome) before the
<br>one on dbs because we will mention about these thing sin our db talks.<br>Doing these first will cover a lot of background.<br><br>rest is fine. I can do PO ~20 min, Gramene ~40 min and lets say a 5-10<br>in pathway if we can split.
<br><br>-pankaj<br><br>Christophe Tissier wrote:<br><br>> hi Pankaj,<br>><br>> no, there are two sessions. We think that GO deserves more than 20minA<br>> whole one will be dedicated to GO+PO+ Metabolic pathways.
<br>> There are going to be 4h altogether.<br>> Session 1 (2h)<br>> introduction to all the DBs:<br>> 40min each including whatever question time you see fit for your own DB.<br>> If you think 40min is too much for your DB, I'm sure we can reallocate
<br>> to time for other things. Do let me know.<br>><br>> Session 2 (2h)<br>> GO+PO (45-50min)<br>> Metabolic pathways (30min)<br>> TAIR genome update (30min)<br>> Do let me know if you intend to participate in this session (if so
<br>> provide me with an outline of your presentation... couple of lines will<br>> suffice. Pankaj, do you want to cover PO?).<br>><br>> Now I guess if you intend to talk about the use of GO in your DB intro,<br>
> we could have the session order reversed. Although we can just as well<br>> mention GO during the talk and introduced the GO talk for those<br>> interested. I don't think the order is that critical so if you have
<br>> preferences we can definitely consider it.<br>><br>> I hope this clarifies things.<br>><br>> oh, by the way, talking to Wendy (one of the ASPB meeting coordinators),<br>> this sessions do NOT fall under the Minisymposium category but
<br>> workshops. As such I don't think there is a need for posters. We are<br>> making arrangement directly with the committee and are bypassing the<br>> whole abstract submission thing via the web. If you want a separate slot
<br>> for your DB on very specialized topics, you might want to consider<br>> submitting an abstract under the Botany Format<br>> <<a href="http://www.2007.botanyconference.org/2007Calls/CallforAbstracts2007.pdf">
http://www.2007.botanyconference.org/2007Calls/CallforAbstracts2007.pdf</a>>,<br>> which also does not require a poster. Or contact Wendy to see where you<br>> presentation would fit best.<br>><br>> If you could all provide me with a very rough dribble on what you intend
<br>> to talk about during the intro session. I need to email Wendy our draft<br>> by monday, so please send it today or at the latest tomorrow morning.<br>> Thank you very much.<br>><br>> Christophe<br>>
<br>> On 2/9/07, Pankaj Jaiswal <<a href="mailto:pj37@cornell.edu">pj37@cornell.edu</a> <mailto:<a href="mailto:pj37@cornell.edu">pj37@cornell.edu</a>>><br>> wrote:<br>><br>> Hi Christophe,<br>
><br>> I think the 2hr session is shaping up something like this<br>><br>> 20 min-TAIR<br>> 20 min-SGN<br>> 20 min-Gramene<br>> 20 min-Ontologies (GO + PO)--> I suggest adding PO
<br>> 20 min-Plant metabolic pathways<br>> 20 min-Questions and discussion.<br>> You can split this 20 min as 5 min after each presentation for<br>> questions and changeover of the speaker or everything towards
<br>> the end.<br>><br>> -Pankaj<br>><br>> Christophe Tissier wrote:<br>><br>> > Hi Claire,<br>> ><br>> > thanks for the emails.<br>> > MaizeGDB can't make it, so it will be TAIR, SGN and Gramene
<br>> together for<br>> > the introductory session.<br>> > As mentioned before, we would hopefully follow up on a second<br>> session<br>> > focusing on Gene Ontology and MetaCyc (we will probably introduce
<br>> AraCyc<br>> > and we could do the same for RiceCyc unless Pankaj wants to do it<br>> > himself. As for you Lukas, I am not sure whether you want to talk<br>> about<br>> > the Cyc you're putting together. It's still in beta, right? not been
<br>> > released to the general public? Overall we think we'll keep the<br>> MetaCyc<br>> > part short and sweet).<br>> > After discussion, I think we're not going to have a third session
<br>> for<br>> > TAIR. We would squeeze 20min of updates on our new genome release<br>> in the<br>> > second session.<br>> ><br>> > I have contacted the organizers of the ASPB meeting (I am sorting out
<br>> > the details for rooms etc. Do let me know if you're going to have<br>> some<br>> > specific requirements for your presentation other than Powerpoint<br>> > usuals, laser pointer...). We will need to submit an abstract for
<br>> each<br>> > session. Although TAIR will fully take care of session 2, it<br>> would be<br>> > nice if you could send me a short description of what you want to<br>> talk<br>
> > about. I will draft an abstract merging all your comments. It<br>> would be<br>> > great if you could send me this by tomorrow.<br>> ><br>> > Thanks<br>> >
<br>> > Christophe<br>> ><br>> ><br>> > On 2/8/07, Claire Elise Hebbard <<a href="mailto:cer17@cornell.edu">cer17@cornell.edu</a><br>> <mailto:<a href="mailto:cer17@cornell.edu">
cer17@cornell.edu</a>><br>> > <mailto:<a href="mailto:cer17@cornell.edu">cer17@cornell.edu</a> <mailto:<a href="mailto:cer17@cornell.edu">cer17@cornell.edu</a>>>> wrote:<br>> ><br>> > Hi, Christophe,
<br>> ><br>> > Thanks for initiating this group effort. Yes, Gramene is<br>> planning to<br>> > attend, and we are interested in a presentation.<br>> ><br>> > Pankaj Jaiswal will be the most likely person to be attending
<br>> and<br>> > presenting. Ideally, we would also like a one hour slot.<br>> ><br>> > I will confirm this with Pankaj and ask him to work on<br>> submitting an<br>> > abstract. We would appreciate your working with the
<br>> organizers to<br>> > try to<br>> > group the DB presentations together, and for your<br>> presentation to go<br>> > first<br>> > since you will be presenting the GO and Metacyc.
<br>> ><br>> > You can contact Pankaj ( <a href="mailto:pj37@cornell.edu">pj37@cornell.edu</a><br>> <mailto:<a href="mailto:pj37@cornell.edu">pj37@cornell.edu</a>> <mailto:<a href="mailto:pj37@cornell.edu">
pj37@cornell.edu</a><br>> <mailto:<a href="mailto:pj37@cornell.edu">pj37@cornell.edu</a>>>)<br>> > or myself directly concerning<br>> > anything else we should know for this coordination.
<br>> ><br>> > Sincerely,<br>> ><br>> > Claire Hebbard<br>> > Gramene Outreach<br>> > <a href="mailto:cer17@cornell.edu">cer17@cornell.edu</a>
<mailto:<a href="mailto:cer17@cornell.edu">cer17@cornell.edu</a>><br>> <mailto:<a href="mailto:cer17@cornell.edu">cer17@cornell.edu</a> <mailto:<a href="mailto:cer17@cornell.edu">cer17@cornell.edu</a>>>
<br>> ><br>> ><br>> ><br>> > > Hi,<br>> > ><br>> > > I am contacting you on behalf of TAIR.<br>> > > We are planning on going to the ASPB meeting in Chicago
<br>> next July<br>> > and<br>> > > wondered whether you had any intentions on attending.<br>> > > This year, TAIR (Harmut Foerster, Tanya Berardini and<br>> myself) and SGN
<br>> > > (Lukas<br>> > > Muller) are planning on a joint session that would introduce<br>> > several plant<br>> > > DBs and wondered whether you would be interested in
<br>> sharing a slot.<br>> > > The idea would be to have a 2h slot to present our<br>> databases (we're<br>> > > planning<br>> > > on maybe four DBs, which would be roughly 30min presentations
<br>> > including<br>> > > questions).<br>> > ><br>> > > TAIR would be happy to run a full session on GO (what its<br>> purpose<br>> > is and
<br>> > > its<br>> > > applications) and probably MetaCyc.<br>> > > We thought it would make sense to have one DB covering these<br>> > topics to<br>
> > > avoid<br>> > > having to repeat the same info everytime.<br>> > ><br>> > > Each DB could thereafter have its own, more in-depth session.<br>
> > TAIR would<br>> > > like to plan on a one hour presentation but we could be<br>> happy to<br>> > share a<br>> > > 2h<br>> > > slot with another DB. The other two could share another
<br>> (assuming<br>> > that one<br>> > > hour is sufficient). In any case, it would probably help<br>> if we'd<br>> > > synchronize<br>> > > our efforts to avoid all having minisymposia at the same
<br>> time and to<br>> > > maximize exposure.<br>> > ><br>> > > If you have not already completed yours, the deadline for<br>> > submission of
<br>> > > the<br>> > > minisymposia abstract is february 14th.<br>> > > Do let me know if this sounds interesting to you and I can<br>> start<br>> > > contacting
<br>> > > the ASPB organizers for book some slots and send some<br>> abstracts.<br>> > ><br>> > > Best regards,<br>> > ><br>> > > Christophe
<br>> > > --<br>> > > Dr Christophe Tissier<br>> MetaCyc:<br>> > > <a href="http://www.metacyc.org/">http://www.metacyc.org/</a><br>> > > MetaCyc/TAIR Curator AraCyc:
<br>> > > <a href="http://www.arabidopsis.org/tools/aracyc/">http://www.arabidopsis.org/tools/aracyc/</a><br>> > <<a href="http://www.arabidopsis.org/tools/aracyc/">http://www.arabidopsis.org/tools/aracyc/
</a>><br>> > > Carnegie Institution of Washington tel +1<br>> 650 325<br>> > 1521<br>> > > x267<br>> > > Stanford<br>> University fax +1
<br>> > 650 325<br>> > > 6857<br>> > > Stanford, CA94305<br>> > > USA<br>> > ><br>> ><br>> ><br>> >
<br>> ><br>> ><br>> > --<br>> > Dr Christophe Tissier MetaCyc:<br>> > <a href="http://www.metacyc.org/">http://www.metacyc.org/</a><br>
> > MetaCyc/TAIR Curator AraCyc:<br>> > <a href="http://www.arabidopsis.org/tools/aracyc/">http://www.arabidopsis.org/tools/aracyc/</a><br>> > Carnegie Institution of Washington tel +1 650 325
<br>> 1521 x267<br>> > Stanford University fax +1<br>> 650 325<br>> > 6857<br>> > Stanford, CA94305<br>> > USA<br>><br>>
<br>><br>><br>> --<br>> Dr Christophe Tissier MetaCyc:<br>> <a href="http://www.metacyc.org/">http://www.metacyc.org/</a> <<a href="http://www.metacyc.org/">http://www.metacyc.org/
</a>><br>> MetaCyc/TAIR Curator AraCyc:<br>> <a href="http://www.arabidopsis.org/tools/aracyc/">http://www.arabidopsis.org/tools/aracyc/</a><br>> Carnegie Institution of Washington tel +1 650 325 1521 x267
<br>> Stanford University fax +1 650 325<br>> 6857<br>> Stanford, CA94305<br>> USA<br><br></blockquote></div><br><br clear="all"><br>-- <br>Dr Christophe Tissier MetaCyc:
<a href="http://www.metacyc.org/">http://www.metacyc.org/</a><br>MetaCyc/TAIR Curator AraCyc: <a href="http://www.arabidopsis.org/tools/aracyc/">http://www.arabidopsis.org/tools/aracyc/</a>
<br>Carnegie Institution of Washington tel +1 650 325 1521 x267<br>Stanford University fax +1 650 325 6857 <br>Stanford, CA94305<br>USA