DB gene | ontology - Liya, Will, Sharon

[Junjian Ni]

Hi Jon,

I guess you are talking about gene models. In the case, probably you
should use gramene mart or gramene ontology dbs instead of cmap to get
gene model-ontology associations.

See the following url using the gramene mart:
http://www.gramene.org/Multi/martview/QHCFxt6GZ8.mart

and url using gramene ontology:
http://www.gramene.org/db/ontology/association_report?id=GO%3A0003674&object_type=Ensembl+gene&object_species=oryza+sativa&page_no=500

Liya or Will or Sharon, please correct me or give more detail info on
that. Thanks.

Ni

> I'm trying to do a DB query on your mysql dumps that will give me the
ontology each gene is associated with. I can't seem to put the query
together. Which dumps, cols and keys will give me the info? Do you folks
have any documentation on how the DB is structured?  Thanks
>


Junjian Ni
Gramene Curator
G15, Bradfield Hall,
Cornell University,
Ithaca, NY 14853