Rice SSR markers from EST

[Dave Matthews]

Hi Liz,

Another place to look for data that might help you is 
http://wheat.pw.usda.gov/ITMI/EST-SSR/Cornell/.  There are some EST-SSRs
there that have been mapped in rice as well as wheat.

Also there are some (untested) rice EST-SSR consensus sequences in
GrainGenes, see http://wheat.pw.usda.gov/ITMI/EST-SSR/.

best regards,
- Dave

: From: Susan McCouch <srm4 at cornell.edu>
: Subject: Re: Rice SSR markers from EST
: Date: Mon, 11 Jul 2005 09:20:34 -0400
: To: gramene at gramene.org, Lim Li Sze <llsze at pd.jaring.my>
: 
: Hi Liz,
: 
: In the paper by Temnykh et al. ,(2000) in TAG 100:697-712, you can 
: identify the batch we developed from ESTs (noted in the table by the 
: GenBank/DDBJ ID number.  There was almost no genomic sequence in those 
: days, so when we say we got them from GenBank, it means that almost all 
: were from ESTs.
: 
: At this point, with all the genome sequence, we do not have an easy way 
: of identifying which were derived from EST's in the automated searches, 
: and which from genomic sequence.
: 
: I hope this is helpful.  Please see 
: <http://www.gramene.org/microsat/index/html> to download the files and 
: the Temnykh et al. (2000) paper.
: 
: Regards,
: Susan
: 
: 
: On Jul 11, 2005, at 2:05 AM, Lim Li Sze wrote:
: 
: >
: > Hi I'm trying to single out rice SSR markers derived from ESTs only. Is
: > there any quick way for me to get this information from Gramene? 
: > Thanks.
: >
: > Liz

-   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -   -
David E. Matthews, Ph.D.          USDA-ARS Plant Genome Database Curator
Cornell University                Email: matthews at greengenes.cit.cornell.edu
Department of Plant Breeding                          Phone: +1-607-255-9951 
409 Bradfield Hall                                      Fax: +1-607-255-6683
Ithaca, New York 14853, USA             GrainGenes: http://wheat.pw.usda.gov