difference between indica and japonica

[Pankaj Jaiswal]

I think dear Kim is referring to paper by Dr. Ray Wu's group.

http://www.gramene.org/newsletters/rice_genetics/rgn6/v6p147.html

Pankaj


KIM RYONGNAM wrote:
> 
> Dear gramene at gramene.org
> 
> I am kim ryong nam reading ''47. Comparison of eleven chloroplast genes
> between an Indica and a Japonica cultivar of rice'' published in your website,
> working in beijing genomic center. I am very very interesting in this paper,
> because I am preparing for annotation of japonica rice. You know some gene
> finding softwares regard the homogeneous property of GC contents in initial
> regions of coding locus of genes as prerequisite. But GC contents is
> inhomogeneous in this regions of rice genome, mostly indica genome and so, new
> gene finding software using inhomogeneous hidden markov model should be used
> in rice genome annotation. I must identify whether the difference GC contents
> in this region between indica and japonica rice genomes exist or not. So, I
> want to get all basic data of this paper including used gene sequences and
> need your help. Could you introduce me another gene sequences different
> between indica and japonica?
> 
> Best wishes
> 
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