'Plant Ontology' on Gramene

[Tanya Berardini]

Hi Pankaj,

At TAIR, we have 214 gene product annotations to the TAIR anatomical terms
and 13 to the developmental growth stage terms.  You should be able to
meet up with Sue at the SOFG meeting and discuss this in more detail.

Cheers,

Tanya


On Mon, 18 Nov 2002, Pankaj Jaiswal wrote:

> Hi Everyone,
>
> Is it possible for me to get some idea (in rough figures), on how much
> integration of the TAIR antomy has been done in the TAIR datasets. This will
> help me before, I start revisions on PO files. In gramene, we have already
> curated about 400 mutants, 50 unigene libraries and couple of hundred of
> proteins using the anatomy terms listed on our website.
>
> I will appreciate your feedback.
>
> Cheers
> Pankaj
>
> Sue Rhee wrote:
> >
> > Hi, folks,
> >
> > I noticed recently that on your Ontology section of Gramene displays
> > 'Plant Ontology' as browsable and searchable.
> >
> > http://gramene.org/plant_ontology/
> >
> > However, it looks like these ontologies are really Gramene's anatomy and
> > developmental stages ontologies, with Gramene IDs, which is good.
> >
> > However, We at TAIR feel that we as POC haven't come to enough consensus
> > on the agreed-upon 'Plant Ontologies' terms and structure for anatomy and
> > developmental stages yet and would like to request that you change the
> > word 'Plant Ontology' to something more specific to Gramene. I think it's
> > a bit confusing the way it is. The places I'm referring to is:
> >
> > 1. The check box for 'Plant Ontology' in the DB search area
> >
> > 2. In the 'Current Ontologies' section, rather than 'Plant OntologyTM
> > (PO)' I think it should say 'Gramene Ontology' or something to that
> > effect.
> >
> > Let me know if this is a problem. Perhaps we can talk more about reviving
> > the discussions on the PO anatomy and developmental stages at the SOFG and
> > Phene meetings...
> >
> > Cheers,
> > Sue
> > -----------------------------------------------------------------------------
> > Sue Rhee                                rhee at acoma.stanford.edu
> > The Arabidopsis Information Resource    URL: www.arabidopsis.org
> > Carnegie Institution of Washington      FAX: +1-650-325-6857
> > Department of Plant Biology             Tel: +1-650-325-1521 ext. 251
> > 260 Panama St.
> > Stanford, CA 94305
> > U.S.A.
> > -----------------------------------------------------------------------------
>
> --
>
> ******************************************
> Pankaj Jaiswal, Ph.D.
> Postdoctoral Associate
> Dept. of Plant Breeding
> Cornell University
> Ithaca, NY-14853, USA
>
> Tel:+1-607-255-3103 / Fax:+1-607-255-6683
> E mail: pj37 at cornell.edu
> http://www.gramene.org
> ******************************************
>

-------------------------------------------------------------------------------
Tanya Berardini, Ph.D.			tberardi at acoma.stanford.edu
The Arabidopsis Information Resource	FAX: (650) 325-6857
Carnegie Institution of Washington	Tel: (650) 325-1521 ext. 325
Department of Plant Biology		URL: http://arabidopsis.org/
260 Panama St.
Stanford, CA 94305
-------------------------------------------------------------------------------