'Plant Ontology' on Gramene

[Pankaj Jaiswal]

Hi Tanya,

Thank you for the figures. This will help. Unfortunately, I am not attending the
SOFG meeting. 
Lincoln will be meeting Sue to discuss more on this at SOFG and I will meet with
her soon at TIGR meeting in December.

Pankaj

Tanya Berardini wrote:
> 
> Hi Pankaj,
> 
> At TAIR, we have 214 gene product annotations to the TAIR anatomical terms
> and 13 to the developmental growth stage terms.  You should be able to
> meet up with Sue at the SOFG meeting and discuss this in more detail.
> 
> Cheers,
> 
> Tanya
> 
> On Mon, 18 Nov 2002, Pankaj Jaiswal wrote:
> 
> > Hi Everyone,
> >
> > Is it possible for me to get some idea (in rough figures), on how much
> > integration of the TAIR antomy has been done in the TAIR datasets. This will
> > help me before, I start revisions on PO files. In gramene, we have already
> > curated about 400 mutants, 50 unigene libraries and couple of hundred of
> > proteins using the anatomy terms listed on our website.
> >
> > I will appreciate your feedback.
> >
> > Cheers
> > Pankaj
> >
> > Sue Rhee wrote:
> > >
> > > Hi, folks,
> > >
> > > I noticed recently that on your Ontology section of Gramene displays
> > > 'Plant Ontology' as browsable and searchable.
> > >
> > > http://gramene.org/plant_ontology/
> > >
> > > However, it looks like these ontologies are really Gramene's anatomy and
> > > developmental stages ontologies, with Gramene IDs, which is good.
> > >
> > > However, We at TAIR feel that we as POC haven't come to enough consensus
> > > on the agreed-upon 'Plant Ontologies' terms and structure for anatomy and
> > > developmental stages yet and would like to request that you change the
> > > word 'Plant Ontology' to something more specific to Gramene. I think it's
> > > a bit confusing the way it is. The places I'm referring to is:
> > >
> > > 1. The check box for 'Plant Ontology' in the DB search area
> > >
> > > 2. In the 'Current Ontologies' section, rather than 'Plant OntologyTM
> > > (PO)' I think it should say 'Gramene Ontology' or something to that
> > > effect.
> > >
> > > Let me know if this is a problem. Perhaps we can talk more about reviving
> > > the discussions on the PO anatomy and developmental stages at the SOFG and
> > > Phene meetings...
> > >
> > > Cheers,
> > > Sue
> > > -----------------------------------------------------------------------------
> > > Sue Rhee                                rhee at acoma.stanford.edu
> > > The Arabidopsis Information Resource    URL: www.arabidopsis.org
> > > Carnegie Institution of Washington      FAX: +1-650-325-6857
> > > Department of Plant Biology             Tel: +1-650-325-1521 ext. 251
> > > 260 Panama St.
> > > Stanford, CA 94305
> > > U.S.A.
> > > -----------------------------------------------------------------------------
> >
> > --
> >
> > ******************************************
> > Pankaj Jaiswal, Ph.D.
> > Postdoctoral Associate
> > Dept. of Plant Breeding
> > Cornell University
> > Ithaca, NY-14853, USA
> >
> > Tel:+1-607-255-3103 / Fax:+1-607-255-6683
> > E mail: pj37 at cornell.edu
> > http://www.gramene.org
> > ******************************************
> >
> 
> -------------------------------------------------------------------------------
> Tanya Berardini, Ph.D.                  tberardi at acoma.stanford.edu
> The Arabidopsis Information Resource    FAX: (650) 325-6857
> Carnegie Institution of Washington      Tel: (650) 325-1521 ext. 325
> Department of Plant Biology             URL: http://arabidopsis.org/
> 260 Panama St.
> Stanford, CA 94305
> -------------------------------------------------------------------------------

-- 

******************************************
Pankaj Jaiswal, Ph.D.                                   
Postdoctoral Associate
Dept. of Plant Breeding                             
Cornell University                                   
Ithaca, NY-14853, USA   

Tel:+1-607-255-3103 / Fax:+1-607-255-6683
E mail: pj37 at cornell.edu
http://www.gramene.org   
******************************************