'Plant Ontology' on Gramene

[Pankaj Jaiswal]

Hi Everyone,

Is it possible for me to get some idea (in rough figures), on how much
integration of the TAIR antomy has been done in the TAIR datasets. This will
help me before, I start revisions on PO files. In gramene, we have already
curated about 400 mutants, 50 unigene libraries and couple of hundred of
proteins using the anatomy terms listed on our website.

I will appreciate your feedback.

Cheers
Pankaj

Sue Rhee wrote:
> 
> Hi, folks,
> 
> I noticed recently that on your Ontology section of Gramene displays
> 'Plant Ontology' as browsable and searchable.
> 
> http://gramene.org/plant_ontology/
> 
> However, it looks like these ontologies are really Gramene's anatomy and
> developmental stages ontologies, with Gramene IDs, which is good.
> 
> However, We at TAIR feel that we as POC haven't come to enough consensus
> on the agreed-upon 'Plant Ontologies' terms and structure for anatomy and
> developmental stages yet and would like to request that you change the
> word 'Plant Ontology' to something more specific to Gramene. I think it's
> a bit confusing the way it is. The places I'm referring to is:
> 
> 1. The check box for 'Plant Ontology' in the DB search area
> 
> 2. In the 'Current Ontologies' section, rather than 'Plant OntologyTM
> (PO)' I think it should say 'Gramene Ontology' or something to that
> effect.
> 
> Let me know if this is a problem. Perhaps we can talk more about reviving
> the discussions on the PO anatomy and developmental stages at the SOFG and
> Phene meetings...
> 
> Cheers,
> Sue
> -----------------------------------------------------------------------------
> Sue Rhee                                rhee at acoma.stanford.edu
> The Arabidopsis Information Resource    URL: www.arabidopsis.org
> Carnegie Institution of Washington      FAX: +1-650-325-6857
> Department of Plant Biology             Tel: +1-650-325-1521 ext. 251
> 260 Panama St.
> Stanford, CA 94305
> U.S.A.
> -----------------------------------------------------------------------------

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Pankaj Jaiswal, Ph.D.                                   
Postdoctoral Associate
Dept. of Plant Breeding                             
Cornell University                                   
Ithaca, NY-14853, USA   

Tel:+1-607-255-3103 / Fax:+1-607-255-6683
E mail: pj37 at cornell.edu
http://www.gramene.org   
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