[Gmod-help] Re: [Gmod-gbrowse] Wiggle density showing smudged expression

[Tripti Grover]

Hi Dave,

For your reference, i have attached the two screenshots, both observed when
zoomed to 200 kpb.

Picture1 smudged expression on centos and
Picture2 desired expression of the same as observed on mac

I have also attached the track definition common to both.

Thanks
Tripti


On Fri, Feb 26, 2010 at 10:01 AM, Dave Clements, GMOD Help Desk <
help at gmod.org> wrote:

> Hi Tripti,
>
> Can you send screenshots of the images, both the ones that appear as you
> want to, and those that don't?  The track definitions would also help.
>
> Thanks,
>
> Dave C.
>
> On Mon, Feb 22, 2010 at 4:04 AM, Tripti Grover <tripti.grover at gmail.com>wrote:
>
>> Hi....
>>
>> I uploaded transcriptomics data on GBrowse 1.70 using the glyph wiggle
>> density on CentOS. I am able to visualize the correct expression profiles
>> for individual genes only when i zoom in till 100kbp, zooming beyond 100 kbp
>> shows smudged expression profiles.
>>
>>  I felt this was related to the bump density parameter explained in the
>> configuration tutorial, however changing this value also showed no change in
>> the view. Interestingly, the same values of bump density are working well on
>> mac os x. What could be the possible reason and solution to this? Or are
>> there any other parameters that i need to look in cent os.
>>
>> Thanks
>> Tripti
>>
>>
>>
>>
>>
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>
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