[Gmod-help] Re: [Gmod-gbrowse] Wiggle density showing smudged expression

[Lincoln Stein]

Just to be clear, this is the *same* server viewed with browsers on two
different platforms, or two different servers?

In the latter case, I think it is just a matter of making sure you have a
version of libgd (and GD.pm) that is capable of generating 24-bit
"truecolor" images.

Lincoln



On Wed, Mar 3, 2010 at 1:10 AM, Tripti Grover <tripti.grover at gmail.com>wrote:

> Hi Dave,
>
> For your reference, i have attached the two screenshots, both observed when
> zoomed to 200 kpb.
>
> Picture1 smudged expression on centos and
> Picture2 desired expression of the same as observed on mac
>
> I have also attached the track definition common to both.
>
> Thanks
> Tripti
>
>
> On Fri, Feb 26, 2010 at 10:01 AM, Dave Clements, GMOD Help Desk <
> help at gmod.org> wrote:
>
>> Hi Tripti,
>>
>> Can you send screenshots of the images, both the ones that appear as you
>> want to, and those that don't?  The track definitions would also help.
>>
>> Thanks,
>>
>> Dave C.
>>
>> On Mon, Feb 22, 2010 at 4:04 AM, Tripti Grover <tripti.grover at gmail.com>wrote:
>>
>>> Hi....
>>>
>>> I uploaded transcriptomics data on GBrowse 1.70 using the glyph wiggle
>>> density on CentOS. I am able to visualize the correct expression profiles
>>> for individual genes only when i zoom in till 100kbp, zooming beyond 100 kbp
>>> shows smudged expression profiles.
>>>
>>>  I felt this was related to the bump density parameter explained in the
>>> configuration tutorial, however changing this value also showed no change in
>>> the view. Interestingly, the same values of bump density are working well on
>>> mac os x. What could be the possible reason and solution to this? Or are
>>> there any other parameters that i need to look in cent os.
>>>
>>> Thanks
>>> Tripti
>>>
>>>
>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Download Intel&#174; Parallel Studio Eval
>>> Try the new software tools for yourself. Speed compiling, find bugs
>>> proactively, and fine-tune applications for parallel performance.
>>> See why Intel Parallel Studio got high marks during beta.
>>> http://p.sf.net/sfu/intel-sw-dev
>>> _______________________________________________
>>> Gmod-gbrowse mailing list
>>> Gmod-gbrowse at lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>>
>>>
>>
>>
>> --
>> ===> PLEASE KEEP RESPONSES ON THE LIST <===
>> http://gmod.org/wiki/2010_GMOD_Summer_School_-_Americas
>> http://gmod.org/wiki/GMOD_Logo_Program
>> http://gmod.org/wiki/GMOD_News
>> Was this helpful? http://gmod.org/wiki/Help_Desk_Feedback
>>
>>
>
>
>
>


-- 
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <Renata.Musa at oicr.on.ca>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://brie4.cshl.edu/pipermail/gmod-help/attachments/20100303/26feeb20/attachment.html>