[Gmod-help] Re: [Gmod-gbrowse] [GBrowse2] NGS Coverage detail

[Andreas Kuntzagk]

Hi,

It's still not working. Since I have no idea what to display I could 
live with this link disabled. Unfortunately I've not figured out how to 
disable it. (Default for all tracks is AUTO)

regards, Andreas

Dave Clements, GMOD Help Desk wrote:
> Hi Andreas.
> 
> I admit that I never gave any thought to what GBrowse should display
> when you click on a SAM/BAM based coverage plot.
> 
> Is this still not working for you?  I'm hoping (but doubtful) that the
> patch to GBrowse_details in another one of your email threads
> ("gbrowse_detail not working anymore") fixed this problem.
> 
> Thanks,
> 
> Dave C.
> 
> On Wed, Jan 27, 2010 at 6:48 AM, Andreas Kuntzagk
> <andreas.kuntzagk at mdc-berlin.de> wrote:
>> Hi,
>>
>> I followed the GBrowse NGS tutorial to add some solexa data to our
>> GBrowse installation. I have a nice coverage plot. But when I click on
>> it, I get an error page:
>>
>> Requested feature not found in database.
>>
>> The error log shows:
>> search_features(-search_term=>coverage:1000:v31.001111 coverage): cannot
>> calculate coverage unless a -seq_id is provided at
>> /usr/local/lib/perl/5.8.8/Bio/Graphics/Browser2/Region.pm line 306
>>
>> What is supposed to be displayed as detail page for the coverage plot
>> and where can I search for the error cause?
>> Or how do I disable the link?
>>
>> regards, Andreas
>>
>>
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> 
> 
>