[Gmod-help] Re: [Gmod-gbrowse] [GBrowse2] NGS Coverage detail

[Scott Cain]

Hi Andreas,

That certainly feels like a bug that needs fixing.  If you want to
turn hyperlinks off for a track, you can set

  link =

That is, with nothing after the equals sign.

Scott


On Wed, Feb 3, 2010 at 4:13 AM, Andreas Kuntzagk
<andreas.kuntzagk at mdc-berlin.de> wrote:
> Hi,
>
> It's still not working. Since I have no idea what to display I could live
> with this link disabled. Unfortunately I've not figured out how to disable
> it. (Default for all tracks is AUTO)
>
> regards, Andreas
>
> Dave Clements, GMOD Help Desk wrote:
>>
>> Hi Andreas.
>>
>> I admit that I never gave any thought to what GBrowse should display
>> when you click on a SAM/BAM based coverage plot.
>>
>> Is this still not working for you?  I'm hoping (but doubtful) that the
>> patch to GBrowse_details in another one of your email threads
>> ("gbrowse_detail not working anymore") fixed this problem.
>>
>> Thanks,
>>
>> Dave C.
>>
>> On Wed, Jan 27, 2010 at 6:48 AM, Andreas Kuntzagk
>> <andreas.kuntzagk at mdc-berlin.de> wrote:
>>>
>>> Hi,
>>>
>>> I followed the GBrowse NGS tutorial to add some solexa data to our
>>> GBrowse installation. I have a nice coverage plot. But when I click on
>>> it, I get an error page:
>>>
>>> Requested feature not found in database.
>>>
>>> The error log shows:
>>> search_features(-search_term=>coverage:1000:v31.001111 coverage): cannot
>>> calculate coverage unless a -seq_id is provided at
>>> /usr/local/lib/perl/5.8.8/Bio/Graphics/Browser2/Region.pm line 306
>>>
>>> What is supposed to be displayed as detail page for the coverage plot
>>> and where can I search for the error cause?
>>> Or how do I disable the link?
>>>
>>> regards, Andreas
>>>
>>>
>>>
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>>
>>
>>
>
>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research