[Gmod-help] Re: [Gmod-gbrowse] Next Gen reads, upper / lower case

[Keiran Raine]

Hi Dave,

The glyph shows all bases lowercase, in the SAM output they are all  
upper, so I'm guessing this is hard coded in the adaptor at the moment.

Thanks,

Keiran


On 2 Feb 2010, at 23:03, Dave Clements, GMOD Help Desk wrote:

> Hi Keiran,
>
> This question has the same response as the one you asked in the "Next
> Gen read glyph" thread.  We currently can't do this.
>
> Have you tried preprocessing the data (or does that mess things up
> and/or get filtered out)?
>
> Dave C.
>
> On Tue, Jan 19, 2010 at 2:04 PM, Keiran Raine <kr2 at sanger.ac.uk>  
> wrote:
>> Hi,
>>
>> Our post-docs have requested that 'good quality' bases in the read be
>> denoted by uppercase and poor by lowercase characters. Is this  
>> accessible
>> via callback?
>>
>> Thanks,
>> Keiran
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