[Gmod-help] Re: gbrowse

[Lincoln Stein]

I would love to have reliable RPM/yum/deb packages for GBrowse, so if anyone
wants to volunteer.....

Lincoln

On Tue, Aug 4, 2009 at 11:07 AM, Tom Laudeman <twl8n at virginia.edu> wrote:

> Aaron,
>
> Sure thing on the source install. That seems the only option for now. We've
> been using RPM/yum for many years, and performance is nearly flawless. There
> are far, far fewer issues than we had doing it the old way. (Granted, the
> distros are better quality now.)
>
> Thanks!
> Tom
>
>
>
> Aaron Mackey wrote:
>
>> I would advise the Gbrowse source code install.  I still don't trust
>> rpm/yum/etc to know more about my machine than I do.
>>
>> That said, I'm also cc'ing the GMOD help desk that the RPM installation
>> instructions on the Wiki are outdated, as biopackages.net <
>> http://biopackages.net> seems to be nonfunctional.
>>
>> -Aaron
>>
>> On Tue, Aug 4, 2009 at 8:55 AM, Tom Laudeman <twl8n at virginia.edu <mailto:
>> twl8n at virginia.edu>> wrote:
>>
>>
>>    http://gmod.org/wiki/GBrowse_RPM_HOWTO
>>
>>    It hasn't been updated since 2007.
>>
>>    Aaron Mackey wrote:
>>
>>        You should be following the instructions at:
>>        http://gmod.org/wiki/GBrowse_Install_HOWTO
>>
>>        Where are you finding these non-standard instructions that
>>        include reference to biopackages.net <http://biopackages.net>
>>        <http://biopackages.net>?
>>
>>        Thanks,
>>
>>        -Aaron
>>
>>
>>        On Mon, Aug 3, 2009 at 4:23 PM, Tom Laudeman
>>        <twl8n at virginia.edu <mailto:twl8n at virginia.edu>
>>        <mailto:twl8n at virginia.edu <mailto:twl8n at virginia.edu>>> wrote:
>>
>>           Aaron,
>>
>>           I'm getting ready to install GMOD Gbrowse. It looks good except
>>           that http://www.biopackages.net/ is gone. Is this just a
>>        temporary
>>           thing or did that server disappear? The install docs are
>>        two years
>>           old.
>>
>>           Thanks!
>>           Tom
>>
>>
>>           --    Tom Laudeman
>>           twl8n at virginia.edu <mailto:twl8n at virginia.edu>
>>        <mailto:twl8n at virginia.edu <mailto:twl8n at virginia.edu>>
>>
>>           (434) 924-2456
>>           http://www.people.virginia.edu/~twl8n/<http://www.people.virginia.edu/%7Etwl8n/>
>>        <http://www.people.virginia.edu/%7Etwl8n/>
>>           <http://www.people.virginia.edu/%7Etwl8n/>
>>           http://laudeman.com/
>>
>>
>>
>>
>>    --    Tom Laudeman
>>    twl8n at virginia.edu <mailto:twl8n at virginia.edu>
>>    (434) 924-2456
>>    http://www.people.virginia.edu/~twl8n/<http://www.people.virginia.edu/%7Etwl8n/>
>>    <http://www.people.virginia.edu/%7Etwl8n/>
>>    http://laudeman.com/
>>
>>
>>
>
> --
> Tom Laudeman
> twl8n at virginia.edu
> (434) 924-2456
> http://www.people.virginia.edu/~twl8n/<http://www.people.virginia.edu/%7Etwl8n/>
> http://laudeman.com/
>
>


-- 
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <Renata.Musa at oicr.on.ca>
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