I would love to have reliable RPM/yum/deb packages for GBrowse, so if anyone wants to volunteer.....<br><br>Lincoln <br><br><div class="gmail_quote">On Tue, Aug 4, 2009 at 11:07 AM, Tom Laudeman <span dir="ltr"><<a href="mailto:twl8n@virginia.edu">twl8n@virginia.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Aaron,<br>
<br>
Sure thing on the source install. That seems the only option for now. We've been using RPM/yum for many years, and performance is nearly flawless. There are far, far fewer issues than we had doing it the old way. (Granted, the distros are better quality now.)<br>
<br>
Thanks!<br>
Tom<br>
<br>
<br>
<br>
Aaron Mackey wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="im">
I would advise the Gbrowse source code install. I still don't trust rpm/yum/etc to know more about my machine than I do.<br>
<br></div>
That said, I'm also cc'ing the GMOD help desk that the RPM installation instructions on the Wiki are outdated, as <a href="http://biopackages.net" target="_blank">biopackages.net</a> <<a href="http://biopackages.net" target="_blank">http://biopackages.net</a>> seems to be nonfunctional.<br>
<br>
-Aaron<div class="im"><br>
<br>
On Tue, Aug 4, 2009 at 8:55 AM, Tom Laudeman <<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a> <mailto:<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a>>> wrote:<br>
<br>
<br>
<a href="http://gmod.org/wiki/GBrowse_RPM_HOWTO" target="_blank">http://gmod.org/wiki/GBrowse_RPM_HOWTO</a><br>
<br>
It hasn't been updated since 2007.<br>
<br>
Aaron Mackey wrote:<br>
<br>
You should be following the instructions at:<br>
<a href="http://gmod.org/wiki/GBrowse_Install_HOWTO" target="_blank">http://gmod.org/wiki/GBrowse_Install_HOWTO</a><br>
<br>
Where are you finding these non-standard instructions that<br>
include reference to <a href="http://biopackages.net" target="_blank">biopackages.net</a> <<a href="http://biopackages.net" target="_blank">http://biopackages.net</a>><br>
<<a href="http://biopackages.net" target="_blank">http://biopackages.net</a>>?<br>
<br>
Thanks,<br>
<br>
-Aaron<br>
<br>
<br>
On Mon, Aug 3, 2009 at 4:23 PM, Tom Laudeman<br>
<<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a> <mailto:<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a>><br></div><div class="im">
<mailto:<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a> <mailto:<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a>>>> wrote:<br>
<br>
Aaron,<br>
<br>
I'm getting ready to install GMOD Gbrowse. It looks good except<br>
that <a href="http://www.biopackages.net/" target="_blank">http://www.biopackages.net/</a> is gone. Is this just a<br>
temporary<br>
thing or did that server disappear? The install docs are<br>
two years<br>
old.<br>
<br>
Thanks!<br>
Tom<br>
<br>
<br>
-- Tom Laudeman<br>
<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a> <mailto:<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a>><br></div>
<mailto:<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a> <mailto:<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a>>><div class="im"><br>
<br>
(434) 924-2456<br>
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<<a href="http://www.people.virginia.edu/%7Etwl8n/" target="_blank">http://www.people.virginia.edu/%7Etwl8n/</a>><br>
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<br>
<br>
<br>
<br>
-- Tom Laudeman<br>
<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a> <mailto:<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a>><br>
(434) 924-2456<br>
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<br>
<br>
</div></blockquote><div><div></div><div class="h5">
<br>
<br>
-- <br>
Tom Laudeman<br>
<a href="mailto:twl8n@virginia.edu" target="_blank">twl8n@virginia.edu</a><br>
(434) 924-2456<br>
<a href="http://www.people.virginia.edu/%7Etwl8n/" target="_blank">http://www.people.virginia.edu/~twl8n/</a><br>
<a href="http://laudeman.com/" target="_blank">http://laudeman.com/</a><br>
<br>
</div></div></blockquote></div><br><br clear="all"><br>-- <br>Lincoln D. Stein<br>Director, Informatics and Biocomputing Platform<br>Ontario Institute for Cancer Research<br>101 College St., Suite 800<br>Toronto, ON, Canada M5G0A3<br>
416 673-8514<br>Assistant: Renata Musa <<a href="mailto:Renata.Musa@oicr.on.ca">Renata.Musa@oicr.on.ca</a>><br>