[Gmod-help] Re: [GMOD-devel] DIYA

[Todd Vision]

Cool - hadn't heard of this project before.  When you respond, can you ask
them if they intend for their wordpress blog to be password-protected?  It
makes it tough to read their doc...

Todd



On 4/29/09 4:16 PM, "Scott Cain" <scott at scottcain.net> wrote:

> Hi Dave,
> 
> Thanks for following up on this--I started a response last night and
> got distracted  (ooh, shiny thing).
> 
> Scott
> 
> 
> On Wed, Apr 29, 2009 at 2:51 PM, Dave Clements, GMOD Help Desk
> <gmodhelp at googlemail.com> wrote:
>> Hi Andrew,
>> 
>> I'll read up on this and bring it up at the next GMOD teleconference.
>> I'll post the results of that discussion to this list.
>> 
>> Thanks for posting,
>> 
>> Dave C.
>> 
>> 
>> Was this helpful?  Let us know at http://gmod.org/wiki/Help_Desk_Feedback
>> 
>> Learn more about GMOD at SMBE & Arthropod Genomics:
>>  http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27
>>  http://www.k-state.edu/agc/symp2009/seminar.html
>> 
>> 
>> 
>> 2009/4/28 Andrew Stewart <andrew.c.stewart at gmail.com>:
>>> (sorry if this is a repost, I subscribed to the mailing list with the wrong
>>> email address previously)
>>> 
>>> I'd like to offer the DIY-Annotator (DIYA), a microbial genome annotation
>>> pipeline, for inclusion as a affiliated GMOD project.  MAKER exists as a
>>> eukaryotic annotator, so the addition of a microbial specific annotator
>>> seems fitting.
>>> 
>>> DIYA is written heavily in bioperl, and aims to generate 'GMOD-compliant'
>>> output (well, GFF-DB compliant at least).
>>> 
>>> It is part of the DIY-Genomics project
>>> ( http://sourceforge.net/projects/diyg/ ), which is an open source
>>> bioinformatics consortium with the intent of bringing together a collection
>>> of tools and libraries into the hands of small scale genomics labs for the
>>> process of sequence assembly and annotation.  The intention of this project
>>> is to go further than packaging and actually distribute virtual appliances,
>>> 'diyg on disk', etc... for easier deployment across everything from the 'lab
>>> rack' to the cloud.
>>> ----------------------------------------------------------------------------
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>>> 
>> 
>> 
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>