[Gmod-help] Re: [GMOD-devel] DIYA

[Scott Cain]

Hi Dave,

Thanks for following up on this--I started a response last night and
got distracted  (ooh, shiny thing).

Scott


On Wed, Apr 29, 2009 at 2:51 PM, Dave Clements, GMOD Help Desk
<gmodhelp at googlemail.com> wrote:
> Hi Andrew,
>
> I'll read up on this and bring it up at the next GMOD teleconference.
> I'll post the results of that discussion to this list.
>
> Thanks for posting,
>
> Dave C.
>
>
> Was this helpful?  Let us know at http://gmod.org/wiki/Help_Desk_Feedback
>
> Learn more about GMOD at SMBE & Arthropod Genomics:
>  http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27
>  http://www.k-state.edu/agc/symp2009/seminar.html
>
>
>
> 2009/4/28 Andrew Stewart <andrew.c.stewart at gmail.com>:
>> (sorry if this is a repost, I subscribed to the mailing list with the wrong
>> email address previously)
>>
>> I'd like to offer the DIY-Annotator (DIYA), a microbial genome annotation
>> pipeline, for inclusion as a affiliated GMOD project.  MAKER exists as a
>> eukaryotic annotator, so the addition of a microbial specific annotator
>> seems fitting.
>>
>> DIYA is written heavily in bioperl, and aims to generate 'GMOD-compliant'
>> output (well, GFF-DB compliant at least).
>>
>> It is part of the DIY-Genomics project
>> ( http://sourceforge.net/projects/diyg/ ), which is an open source
>> bioinformatics consortium with the intent of bringing together a collection
>> of tools and libraries into the hands of small scale genomics labs for the
>> process of sequence assembly and annotation.  The intention of this project
>> is to go further than packaging and actually distribute virtual appliances,
>> 'diyg on disk', etc... for easier deployment across everything from the 'lab
>> rack' to the cloud.
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>>
>
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-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research