[Gmod-help] Re: [Gmod-gbrowse] Overview of contig not updating

[Sheldon McKay]

Hi Emily,

Have you installed a fresh checkout of bioperl-live?

Sheldon

On Thu, Sep 4, 2008 at 10:11 PM, Emily Wong <e.wong at usyd.edu.au> wrote:

>  Hi Dave,
>
>
> Thanks for your reply. We have recently upgraded to the 1.69 version.
> However it seems that there are issues as even the yeast example is not
> working.
> (http://gbrowse.angis.org.au/cgi-bin/gbrowse/yeast/)
>
> The browser was installed from source code on a Fedora machine. Here is the
> gbrowse that I'm working on (with the non-updating overview):
> http://gbrowse.angis.org.au/cgi-bin/gbrowse/anolis/.
>
> I shall reinstall it but any suggestions as to why there are such problems
> will be greatly appreciated.
>
>
> Many thanks,
> Emily
>
>
>
> Emily Wong
>
> PhD Student
>
> Faculty of Veterinary Science
> The University of Sydney
> Room 511,
> Gunn Building (B19), Regimental Crescent
> NSW 2006 Australia
> Email: ewong at usyd.edu.au
> Ph: +61 433 567 288
>
>
>
>
>
> -----Original Message-----
> From: Dave Clements, GMOD Help Desk [mailto:gmodhelp at googlemail.com<gmodhelp at googlemail.com>
> ]
> Sent: Thu 9/4/2008 11:50 PM
> To: Emily Wong
> Cc: gmod-gbrowse at lists.sourceforge.net
> Subject: Re: [Gmod-gbrowse] Overview of contig not updating
>
> Hello Emily,
>
> Can you send some additional information?  What version of GBrowse are
> you running?  If you aren't running 1.69 we generally start out by
> recommend upgrading to it.
>
> Does the region track update, or is it also stuck?
>
> Does rubberbanding in the Overview track work at all, or is it broken too?
>
> A screen shot might help too.
>
> Finally, is your GBrowse instance available on a public URL, so we
> could try some things?
>
> I apologize for the delayed response.  The main help desk folks,
> myself included, are traveling a lot during the first two weeks of
> September.
>
> Thanks,
>
> Dave C
> GMOD Help Desk
>
> On Sat, Aug 30, 2008 at 9:09 AM, Emily Wong <e.wong at usyd.edu.au> wrote:
> > Hello,
> >
> > I was wondering if anyone could help me - The overview on my gbrowse page
> is
> > not updating at all for some reason.
> >
> > It is constantly stuck at what appears to be a random contig name.
> However
> > other tracks and labels do update properly when the viewing location is
> > changed.
> >
> > Any suggestions would be greatly appreciated.
> >
> > Thanks in advance,
> > Emily
> >
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> >
> >
>
>
>
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-- 
Sheldon J. McKay, PhD
Research Investigator
Cold Spring Harbor Laboratory
Office: 516-367-6998
Fax: 516 367-6851
Email: mckays at cshl.edu
Skype: mckays630
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