[Gmod-help] RE: [Gmod-gbrowse] Overview of contig not updating

[Emily Wong]

Hi Dave,


Thanks for your reply. We have recently upgraded to the 1.69 version. However it seems that there are issues as even the yeast example is not working.
(http://gbrowse.angis.org.au/cgi-bin/gbrowse/yeast/)

The browser was installed from source code on a Fedora machine. Here is the gbrowse that I'm working on (with the non-updating overview): http://gbrowse.angis.org.au/cgi-bin/gbrowse/anolis/.

I shall reinstall it but any suggestions as to why there are such problems will be greatly appreciated.


Many thanks,
Emily



Emily Wong

PhD Student

Faculty of Veterinary Science
The University of Sydney
Room 511, 
Gunn Building (B19), Regimental Crescent
NSW 2006 Australia
Email: ewong at usyd.edu.au
Ph: +61 433 567 288




-----Original Message-----
From: Dave Clements, GMOD Help Desk [mailto:gmodhelp at googlemail.com]
Sent: Thu 9/4/2008 11:50 PM
To: Emily Wong
Cc: gmod-gbrowse at lists.sourceforge.net
Subject: Re: [Gmod-gbrowse] Overview of contig not updating
 
Hello Emily,

Can you send some additional information?  What version of GBrowse are
you running?  If you aren't running 1.69 we generally start out by
recommend upgrading to it.

Does the region track update, or is it also stuck?

Does rubberbanding in the Overview track work at all, or is it broken too?

A screen shot might help too.

Finally, is your GBrowse instance available on a public URL, so we
could try some things?

I apologize for the delayed response.  The main help desk folks,
myself included, are traveling a lot during the first two weeks of
September.

Thanks,

Dave C
GMOD Help Desk

On Sat, Aug 30, 2008 at 9:09 AM, Emily Wong <e.wong at usyd.edu.au> wrote:
> Hello,
>
> I was wondering if anyone could help me - The overview on my gbrowse page is
> not updating at all for some reason.
>
> It is constantly stuck at what appears to be a random contig name. However
> other tracks and labels do update properly when the viewing location is
> changed.
>
> Any suggestions would be greatly appreciated.
>
> Thanks in advance,
> Emily
>
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