<div dir="ltr">Hi Emily,<br><br>Have you installed a fresh checkout of bioperl-live? <br><br>Sheldon<br><br><div class="gmail_quote">On Thu, Sep 4, 2008 at 10:11 PM, Emily Wong <span dir="ltr"><<a href="mailto:e.wong@usyd.edu.au">e.wong@usyd.edu.au</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div>
<p><font size="2">Hi Dave,<br>
<br>
<br>
Thanks for your reply. We have recently upgraded to the 1.69 version. However it seems that there are issues as even the yeast example is not working.<br>
(<a href="http://gbrowse.angis.org.au/cgi-bin/gbrowse/yeast/" target="_blank">http://gbrowse.angis.org.au/cgi-bin/gbrowse/yeast/</a>)<br>
<br>
The browser was installed from source code on a Fedora machine. Here is the gbrowse that I'm working on (with the non-updating overview): <a href="http://gbrowse.angis.org.au/cgi-bin/gbrowse/anolis/" target="_blank">http://gbrowse.angis.org.au/cgi-bin/gbrowse/anolis/</a>.<br>
<br>
I shall reinstall it but any suggestions as to why there are such problems will be greatly appreciated.<br>
<br>
<br>
Many thanks,<br>
Emily<br>
<br>
<br>
<br>
Emily Wong<br>
<br>
PhD Student<br>
<br>
Faculty of Veterinary Science<br>
The University of Sydney<br>
Room 511,<br>
Gunn Building (B19), Regimental Crescent<br>
NSW 2006 Australia<br>
Email: <a href="mailto:ewong@usyd.edu.au" target="_blank">ewong@usyd.edu.au</a><br>
Ph: +61 433 567 288<div><div></div><div class="Wj3C7c"><br>
<br>
<br>
<br>
<br>
-----Original Message-----<br>
From: Dave Clements, GMOD Help Desk [<a href="mailto:gmodhelp@googlemail.com" target="_blank">mailto:gmodhelp@googlemail.com</a>]<br>
Sent: Thu 9/4/2008 11:50 PM<br>
To: Emily Wong<br>
Cc: <a href="mailto:gmod-gbrowse@lists.sourceforge.net" target="_blank">gmod-gbrowse@lists.sourceforge.net</a><br>
Subject: Re: [Gmod-gbrowse] Overview of contig not updating<br>
<br>
Hello Emily,<br>
<br>
Can you send some additional information? What version of GBrowse are<br>
you running? If you aren't running 1.69 we generally start out by<br>
recommend upgrading to it.<br>
<br>
Does the region track update, or is it also stuck?<br>
<br>
Does rubberbanding in the Overview track work at all, or is it broken too?<br>
<br>
A screen shot might help too.<br>
<br>
Finally, is your GBrowse instance available on a public URL, so we<br>
could try some things?<br>
<br>
I apologize for the delayed response. The main help desk folks,<br>
myself included, are traveling a lot during the first two weeks of<br>
September.<br>
<br>
Thanks,<br>
<br>
Dave C<br>
GMOD Help Desk<br>
<br>
On Sat, Aug 30, 2008 at 9:09 AM, Emily Wong <<a href="mailto:e.wong@usyd.edu.au" target="_blank">e.wong@usyd.edu.au</a>> wrote:<br>
> Hello,<br>
><br>
> I was wondering if anyone could help me - The overview on my gbrowse page is<br>
> not updating at all for some reason.<br>
><br>
> It is constantly stuck at what appears to be a random contig name. However<br>
> other tracks and labels do update properly when the viewing location is<br>
> changed.<br>
><br>
> Any suggestions would be greatly appreciated.<br>
><br>
> Thanks in advance,<br>
> Emily<br>
><br>
> -------------------------------------------------------------------------<br>
> This SF.Net email is sponsored by the Moblin Your Move Developer's challenge<br>
> Build the coolest Linux based applications with Moblin SDK & win great<br>
> prizes<br>
> Grand prize is a trip for two to an Open Source event anywhere in the world<br>
> <a href="http://moblin-contest.org/redirect.php?banner_id=100&url=/" target="_blank">http://moblin-contest.org/redirect.php?banner_id=100&url=/</a><br>
> _______________________________________________<br>
> Gmod-gbrowse mailing list<br>
> <a href="mailto:Gmod-gbrowse@lists.sourceforge.net" target="_blank">Gmod-gbrowse@lists.sourceforge.net</a><br>
> <a href="https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse" target="_blank">https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse</a><br>
><br>
><br>
<br>
<br>
<br>
--<br>
Was this helpful? Let us know at <a href="http://gmod.org/wiki/Help_Desk_Feedback" target="_blank">http://gmod.org/wiki/Help_Desk_Feedback</a><br>
<br>
</div></div></font>
</p>
</div>
<br>-------------------------------------------------------------------------<br>
This SF.Net email is sponsored by the Moblin Your Move Developer's challenge<br>
Build the coolest Linux based applications with Moblin SDK & win great prizes<br>
Grand prize is a trip for two to an Open Source event anywhere in the world<br>
<a href="http://moblin-contest.org/redirect.php?banner_id=100&url=/" target="_blank">http://moblin-contest.org/redirect.php?banner_id=100&url=/</a><br>_______________________________________________<br>
Gmod-gbrowse mailing list<br>
<a href="mailto:Gmod-gbrowse@lists.sourceforge.net">Gmod-gbrowse@lists.sourceforge.net</a><br>
<a href="https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse" target="_blank">https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse</a><br>
<br></blockquote></div><br><br clear="all"><br>-- <br>Sheldon J. McKay, PhD<br>Research Investigator<br>Cold Spring Harbor Laboratory<br>Office: 516-367-6998<br>Fax: 516 367-6851<br>Email: <a href="mailto:mckays@cshl.edu">mckays@cshl.edu</a> <br>
Skype: mckays630<br><br>
</div>