[Feedback] Site Feedback: Retrieving 2kb upstream sequences of a list of RGAP locus

[swan peter]

Dear Dr. Monaco,

Thanks for the direction. However, I couldnt retrieve the upstream
sequences of my genes of interest.  Could you tell me where I made mistake?

For clarification, I attach a image showing how I tried to make it.

Thanks,

Swan






On Thu, Mar 26, 2015 at 4:34 AM, Marcela K. Monaco <mmonaco at cshl.edu> wrote:

> Dear Swan,
>
> You could use our Gramene Mart at
> http://ensembl.gramene.org/biomart/martview.  Select the Plant Genes
> dataset for your species of interest, then upload a list of gene
> identifiers under Filters, and finally select "Sequences" under Features,
> and last, specify which additional region(s) you would like to include in
> your customized downloads.
>
> Hope this was clear.  Let me know if you need further assistance.
> Thanks,
>
> Marcela
>
>
> On Tue, Mar 24, 2015 at 10:42 PM, feedback at gramene.org <
> feedback at gramene.org> wrote:
>
>> URL         : https://www.google.co.kr/
>>
>> Subject     : Site Feedback: Retrieving 2kb upstream sequences of a list
>> of RGAP locus
>>
>> Name        : Swan
>>
>> Email       : kozhaki.seq at gmail.com
>>
>> Organization: CPCRI
>>
>> Comments    :
>>
>> Hi Gramene..
>>
>> I can get the 2kb upstream sequence of individual genes by querying the
>> RGAP rice locus id in  Gramene search area. So how can retrieve the 2 kb
>> upstream of  many rice RGAP locus id?
>>
>> FTP looks like, I should have some programming done to retrieve it. I
>> would like to  know the easiest way to do that.
>>
>> Thank you...!!
>>
>>
>> http://www.warelab.org/bugs/view.php?id=5142
>>
>>
>> _______________________________________________
>> Feedback mailing list
>> Feedback at gramene.org
>> http://brie4.cshl.edu/mailman/listinfo/feedback
>>
>
>
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