[Feedback] Site Feedback: Retrieving 2kb upstream sequences of a list of RGAP locus

[Marcela K. Monaco]

Dear Swan,

You could use our Gramene Mart at
http://ensembl.gramene.org/biomart/martview.  Select the Plant Genes
dataset for your species of interest, then upload a list of gene
identifiers under Filters, and finally select "Sequences" under Features,
and last, specify which additional region(s) you would like to include in
your customized downloads.

Hope this was clear.  Let me know if you need further assistance.
Thanks,

Marcela


On Tue, Mar 24, 2015 at 10:42 PM, feedback at gramene.org <feedback at gramene.org
> wrote:

> URL         : https://www.google.co.kr/
>
> Subject     : Site Feedback: Retrieving 2kb upstream sequences of a list
> of RGAP locus
>
> Name        : Swan
>
> Email       : kozhaki.seq at gmail.com
>
> Organization: CPCRI
>
> Comments    :
>
> Hi Gramene..
>
> I can get the 2kb upstream sequence of individual genes by querying the
> RGAP rice locus id in  Gramene search area. So how can retrieve the 2 kb
> upstream of  many rice RGAP locus id?
>
> FTP looks like, I should have some programming done to retrieve it. I
> would like to  know the easiest way to do that.
>
> Thank you...!!
>
>
> http://www.warelab.org/bugs/view.php?id=5142
>
>
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>
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