[Feedback] Site Feedback: wrongly annotated?

[Subbaiah Chalivendra]

Thank you very much for your reply. Sorry for the false alarm. I find now
that it is a sucrose synthase. I made a mistake when I entered the
coordinates.You may please cancel the ticket.

Subbaiah


On Wed, Aug 13, 2014 at 4:55 PM, <feedback at gramene.org> wrote:

> URL         : http://tools.gramene.org/search?query=GRMZM2G152908
>
> Subject     : Site Feedback: wrongly annotated?
>
> Name        : Subbaiah Chalivendra
>
> Email       : schalivendra at lsu.edu
>
> Organization: none
>
> Comments    :
>
> Hi,
>
> I am trying to retrieve coding and upstream sequences for maize sucrose
> synthase gene ZmSUS1 (gene model: GRMZM2G152908). It is mapped to chr9:
> 122219990-122227063. When I downloaded the sequence and did a blastx search
> on NCBI, I am getting alignment with putative transposase or transposon
> protein sequences rather than sucrose synthase. I appreciate to know
> whether the region has been mis-annotated. I also want to know how I can
> obtain the correct SUS1 genomic sequence complete with its upstream
> regulatory sequence.
>
> thanks very much,
> Subbaiah
>
> http://www.warelab.org/bugs/view.php?id=5004
>
>
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