<div dir="ltr">Thank you very much for your reply. Sorry for the false alarm. I find now that it is a sucrose synthase. I made a mistake when I entered the coordinates.You may please cancel the ticket.<div><br></div><div>Subbaiah</div>
</div><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Aug 13, 2014 at 4:55 PM, <span dir="ltr"><<a href="mailto:feedback@gramene.org" target="_blank">feedback@gramene.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
URL : <a href="http://tools.gramene.org/search?query=GRMZM2G152908" target="_blank">http://tools.gramene.org/search?query=GRMZM2G152908</a><br>
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Subject : Site Feedback: wrongly annotated?<br>
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Name : Subbaiah Chalivendra<br>
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Email : <a href="mailto:schalivendra@lsu.edu">schalivendra@lsu.edu</a><br>
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Organization: none<br>
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Comments :<br>
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Hi,<br>
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I am trying to retrieve coding and upstream sequences for maize sucrose synthase gene ZmSUS1 (gene model: GRMZM2G152908). It is mapped to chr9: 122219990-122227063. When I downloaded the sequence and did a blastx search on NCBI, I am getting alignment with putative transposase or transposon protein sequences rather than sucrose synthase. I appreciate to know whether the region has been mis-annotated. I also want to know how I can obtain the correct SUS1 genomic sequence complete with its upstream regulatory sequence.<br>
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thanks very much,<br>
Subbaiah<br>
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<a href="http://www.warelab.org/bugs/view.php?id=5004" target="_blank">http://www.warelab.org/bugs/view.php?id=5004</a><br>
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