[Po-dev] tuber developmental stages

[Pankaj Jaiswal (OSU)]

Peter Stevens wrote:
 > spuds are stem tubers; other taxa have root tubers...
 >
 > P.

Pankaj Jaiswal (OSU) wrote:
> Following are my suggestions.
> 
> Pankaj
> 
> Looks like sprout development is a case of either adding synonyms or 
> adding the new term under
> PO:0007073 : 2 formation of axillary shoot
> http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0007073 
> 
> 
> As a suggestion, we can have two siblings of this term.
> 
> PO:0007073 : 2 formation of axillary shoot
> -is_a- formation of axillary shoot from non-dormant shoot (PO:new_A)
> -is_a- formation of axillary shoot from dormant shoot (PO:new_B)
> 
> # Thus any axillary shoot developments from tuber would be annotated to 
>  PO:new_B
> # All the existing children of  PO:0007073 : 2 formation of axillary 
> shoot  would become children of PO: new_A
> 
> For the following three we need to come up with new terms may be for 
> 'food storage structure development' under
> PO:0007021 : plant structure development stages
> 
> e.g.
> PO:0007021 : plant structure development stages
> -is_a- food storage structure development (PO:new)
> ----is_a- tuber development (PO:new)
> -------is_a- tuber initiation (PO:new)
> -------is_a- tuber growth (PO:new)
> -------is_a- tuber maturation (PO:new)
> 
> 
> Anuradha Pujar wrote:
>> Hi Dennis,
>>
>> Were thinking you of a specific term to which we could add this as
>> synonym?  We did have a discussion about growth stages in vegetative
>> reproduction, but now I don't recall if the decision was to introduce the
>> parent term or not. Chih wei?
>>
>> Best
>> anu
>>
>>> I need to think about these as synonyms.  Particularly sprout 
>>> development
>>> which is no more then and axillary bud released from dormancy.
>>>
>>> Dennis
>>> Dennis Wm. Stevenson
>>> Vice President for Botanical Science
>>>
>>> Editor, Botanical Review
>>> Associate Editor, FLORA
>>> Editor-in-Chief, Cladistics
>>>
>>> New York Botanical Garden
>>> 2900 Southern Blvd. Bronx, NY 10458
>>> Telephone: 718-817-8632 email: dws at nybg.org
>>> http://www.plantsystematics.org/
>>> http://plantnet.rbgsyd.gov.au/PlantNet/cycad/
>>> http://www.nybg.org/science/scientist_profile.php?id_scientist=21
>>>
>>> ________________________________
>>>
>>> From: po-dev-bounces at plantontology.org on behalf of Naama Menda
>>> Sent: Thu 6/25/2009 10:29 AM
>>> To: Chih-Wei Tung
>>> Cc: Anuradha Pujar; po-dev at plantontology.org
>>> Subject: [Po-dev] tuber developmental stages
>>>
>>>
>>> hi Chih-Wei,
>>>
>>> I have a bunch of potato genes which are expressed in different tuber
>>> developmental stages (e.g. the potato pmt gene is expressed in small
>>> sprouts only http://www.ncbi.nlm.nih.gov/pubmed/16088399).
>>> These terms are not in PO.
>>>
>>> how's:
>>> -sprout development
>>> -tuber initiation
>>> -tuber growth
>>> -tuber maturation
>>>
>>>
>>> http://74.125.47.132/search?q=cache:wR_-xdH4-ykJ:www.ag.uidaho.edu/potato/PotatoProductionSystems/Topics/Growth%26Development.pdf+potato+tuber+growth+stages&cd=7&hl=en&ct=clnk&gl=us&client=firefox-a 
>>>
>>>
>>> thanks!
>>> -Naama
>>>
>>>
>>> Naama Menda
>>> Boyce Thompson Institute for Plant Research
>>> Tower Rd
>>> Ithaca NY 14853
>>> USA
>>>
>>> (607) 254 3569
>>> Sol Genomics Network
>>> http://www.sgn.cornell.edu <http://www.sgn.cornell.edu/>
>>> nm249 at cornell.edu
>>>
>>>
>>
>>
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> 

-- 
Pankaj Jaiswal
Assistant Professor
Dept. of Botany and Plant Pathology
3082 Cordley Hall
Oregon State University
Corvallis, OR, 97331-2902, USA

Ph.: +1-541-737-8471
Fax: +1-541-737-3573
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