[Po-dev] tuber developmental stages

[Pankaj Jaiswal (OSU)]

Following are my suggestions.

Pankaj

Looks like sprout development is a case of either adding synonyms or 
adding the new term under
PO:0007073 : 2 formation of axillary shoot
http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0007073

As a suggestion, we can have two siblings of this term.

PO:0007073 : 2 formation of axillary shoot
-is_a- formation of axillary shoot from non-dormant shoot (PO:new_A)
-is_a- formation of axillary shoot from dormant shoot (PO:new_B)

# Thus any axillary shoot developments from tuber would be annotated to 
  PO:new_B
# All the existing children of  PO:0007073 : 2 formation of axillary 
shoot  would become children of PO: new_A

For the following three we need to come up with new terms may be for 
'food storage structure development' under
PO:0007021 : plant structure development stages

e.g.
PO:0007021 : plant structure development stages
-is_a- food storage structure development (PO:new)
----is_a- tuber development (PO:new)
-------is_a- tuber initiation (PO:new)
-------is_a- tuber growth (PO:new)
-------is_a- tuber maturation (PO:new)


Anuradha Pujar wrote:
> Hi Dennis,
> 
> Were thinking you of a specific term to which we could add this as
> synonym?  We did have a discussion about growth stages in vegetative
> reproduction, but now I don't recall if the decision was to introduce the
> parent term or not. Chih wei?
> 
> Best
> anu
> 
>> I need to think about these as synonyms.  Particularly sprout development
>> which is no more then and axillary bud released from dormancy.
>>
>> Dennis
>> Dennis Wm. Stevenson
>> Vice President for Botanical Science
>>
>> Editor, Botanical Review
>> Associate Editor, FLORA
>> Editor-in-Chief, Cladistics
>>
>> New York Botanical Garden
>> 2900 Southern Blvd. Bronx, NY 10458
>> Telephone: 718-817-8632 email: dws at nybg.org
>> http://www.plantsystematics.org/
>> http://plantnet.rbgsyd.gov.au/PlantNet/cycad/
>> http://www.nybg.org/science/scientist_profile.php?id_scientist=21
>>
>> ________________________________
>>
>> From: po-dev-bounces at plantontology.org on behalf of Naama Menda
>> Sent: Thu 6/25/2009 10:29 AM
>> To: Chih-Wei Tung
>> Cc: Anuradha Pujar; po-dev at plantontology.org
>> Subject: [Po-dev] tuber developmental stages
>>
>>
>> hi Chih-Wei,
>>
>> I have a bunch of potato genes which are expressed in different tuber
>> developmental stages (e.g. the potato pmt gene is expressed in small
>> sprouts only http://www.ncbi.nlm.nih.gov/pubmed/16088399).
>> These terms are not in PO.
>>
>> how's:
>> -sprout development
>> -tuber initiation
>> -tuber growth
>> -tuber maturation
>>
>>
>> http://74.125.47.132/search?q=cache:wR_-xdH4-ykJ:www.ag.uidaho.edu/potato/PotatoProductionSystems/Topics/Growth%26Development.pdf+potato+tuber+growth+stages&cd=7&hl=en&ct=clnk&gl=us&client=firefox-a
>>
>> thanks!
>> -Naama
>>
>>
>> Naama Menda
>> Boyce Thompson Institute for Plant Research
>> Tower Rd
>> Ithaca NY 14853
>> USA
>>
>> (607) 254 3569
>> Sol Genomics Network
>> http://www.sgn.cornell.edu <http://www.sgn.cornell.edu/>
>> nm249 at cornell.edu
>>
>>
> 
> 
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-- 
Pankaj Jaiswal
Assistant Professor
Dept. of Botany and Plant Pathology
3082 Cordley Hall
Oregon State University
Corvallis, OR, 97331-2902, USA

Ph.: +1-541-737-8471
Fax: +1-541-737-3573
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