Problem with PO files

[Pankaj Jaiswal]

Sorry for the duplicate use of the ID. It is fixed now in the
po_anatomy.obo file new revision: 1.44

Pankaj

Tanya Berardini wrote:
> Dear PO folks,
> 
> We've run into a problem that is causing our term loader to get confused.
> 
> (1) From the po_temporal file:
> 
> format-version: 1.0
> version: $Revision: 1.31 $
> date: 12:04:2007 10:30
> saved-by: cwt6
> auto-generated-by: DAG-Edit 1.419 rev 3
> default-namespace: plant_ontology
> 
> [Term]
> id: PO:0009012
> name: plant growth and development stages
> namespace: plant_growth_and_development_stage
> def: "The succession of changes leading from the zygote to the mature 
> plant. " [Poc:curators ""]
> synonym: "Arabidopsis growth" [TAIR:0000205]
> 
> 
> (2) From the po_anatomy file:
> 
> format-version: 1.0
> version: $Revision: 1.43 $
> date: 01:05:2007 15:58
> saved-by: cwt6
> auto-generated-by: DAG-Edit 1.419 rev 3
> default-namespace: plant_ontology
> subsetdef: Rice "Term used for rice"
> subsetdef: Maize "Term used for maize"
> subsetdef: Citrus "Term used for citrus"
> subsetdef: Tomato "Term used for tomato"
> subsetdef: Arabidopsis "Term used for Arabidopsis"
> subsetdef: Poaceae "Term used for grasses"
> subsetdef: reference "reference plant structure term"
> 
> [Term]
> id: PO:0009012
> name: petiole pulvinus
> namespace: plant_structure
> def: "Pulvinus of the petiole" [GR:cwt]
> is_a: PO:0009000 ! pulvinus
> relationship: part_of PO:0020038 ! petiole
> 
> 
> Because the same identifier (PO:0009012) is used for two different terms 
> in two different ontologies, we are running into errors.
> 
> 
> Thanks very much for your help in resolving this.
> 
> 
> Tanya
> 
> ------------------------------------------------------------------------------------------ 
> 
> Tanya Berardini, Ph.D.            tberardi at acoma.stanford.edu
> The Arabidopsis Information Resource    FAX: (650) 325-6857
> Carnegie Institution of Washington    Tel: (650) 325-1521 ext. 325
> Department of Plant Biology        URL: http://arabidopsis.org/
> 260 Panama St.
> Stanford, CA 94305
> ------------------------------------------------------------------------------------------ 
> 
> 
> 

-- 
Pankaj Jaiswal
G-15, Bradfield Hall
Dept. of Plant Breeding and Genetics
Cornell University
Ithaca, NY-14853, USA

Ph. +1-607-255-3103 / 4199
fax: +1-607-255-6683