making it easier for databases to use the PO

Shuly Avraham shuly at cshl.edu
Tue Jan 25 11:38:43 EST 2005


Hi Mary,

This kind of list is very easy to generate. If all you need is a flat 
list of terms organized alphabetically, I can generate the list and 
place the file on our (soon to come) FTP site.
If there are other kinds of requsets or database queries, I can generate 
those as well.
In addition, in the near future we will have a mysql database dump on 
the ftp site, so you can create a local copy of the database, and query 
it as you need.

Shuly.

Mary Polacco wrote:

>Hi all
>
>Is there any reason not to post a list of the PO accessions and the terms,
>alphabetically - ie no ontology structure?
>
>It makes it easier for database folks such as myself both to retrofit, and
>use the approved terms and their the accession IDs.
>
>Attached is a list - from last fall, the CVS dump of terms with accessions
>and ontology structure, that I used to help map to MaizeGDB. Missing terms,
>eg synonyms for husk, I mapped using the PO AmiGO browser.  It should be
>trivial for a regular update of this sort to be dumped from the AmiGO
>database.
>
>  mary
>  
>



More information about the Po-dev mailing list