making it easier for databases to use the PO
Shuly Avraham
shuly at cshl.edu
Tue Jan 25 11:38:43 EST 2005
Hi Mary,
This kind of list is very easy to generate. If all you need is a flat
list of terms organized alphabetically, I can generate the list and
place the file on our (soon to come) FTP site.
If there are other kinds of requsets or database queries, I can generate
those as well.
In addition, in the near future we will have a mysql database dump on
the ftp site, so you can create a local copy of the database, and query
it as you need.
Shuly.
Mary Polacco wrote:
>Hi all
>
>Is there any reason not to post a list of the PO accessions and the terms,
>alphabetically - ie no ontology structure?
>
>It makes it easier for database folks such as myself both to retrofit, and
>use the approved terms and their the accession IDs.
>
>Attached is a list - from last fall, the CVS dump of terms with accessions
>and ontology structure, that I used to help map to MaizeGDB. Missing terms,
>eg synonyms for husk, I mapped using the PO AmiGO browser. It should be
>trivial for a regular update of this sort to be dumped from the AmiGO
>database.
>
> mary
>
>
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