spatial terms

[Leonore Reiser]

Depends on how you are defining the first leaf- doesnt it.
Counting from first leaf after the cotyledon (which may or may not be
formed in the embryo prior to dessication)...
Leonore

On Mon, 22 Mar 2004, Pankaj Jaiswal wrote:

>
> Hi Everyone,
>
> I just now started working on the leaf section and encountered the
> problem on how do we represent the spatial organization. Since
> PATO/phenotype attribute ontology is way off from implementation what
> are our rules on this.
>
> here are a few spatial attribute examples which I think are necessary to
> describe a gene's transcript/protein expression profile or a phenotype.
>
>
> first
> second
> third
> fourth
> fifth
> 	e.g.
> 	first leaf
> 	second leaf
> 	first / second internode
> 	first / second node
> basal
> uppermost ; synonym:topmost
> lower
> upper
> 	e.g.
> 	basal / uppermost internodes
> 	topmost leaves
> 	lower floret
> 	upper floret
> primary
> secondary
> 	e.g.
> 	primary / secondary panicle branches
> 	spikelets of the primary branches
>
>
>

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Leonore Reiser, Ph.D.                   lreiser at acoma.stanford.edu
The Arabidopsis Information Resource	FAX: (650) 325-6857
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