Query on PO

Shuly shuly at cshl.edu
Wed Aug 11 01:16:28 EDT 2004


Hi Sergio,

My name is Shuly, and I am responsible for the technical aspect of the 
PO database and data uploads.

We are currently using the GO schema and the go-dev package to generate 
the schemas and upload PO data into the database..
You can find the go-dev package on the geneontology web site, download 
it from SourceForge, or get it in the monthly release of the GO.
I am afraid we don't have the specific PO documentation on that 
particular aspect yet, but you can find suitable info on the 
geneontology web site:
http://www.godatabase.org/dev/sql/doc/godb-sql-doc.html.
Switching to the chado schema is one of the future directions of GO, but 
I am not sure where is stands at the moment.

Shuly.

Gregorio, Sergio (IRRI) wrote:

> To Whom it may concern:
>  
> I'd like to follow up an earlier query.  I recently downloaded copies 
> of your Plant Ontologies.  Upon examining your definition and ontology 
> structure files, I noticed you have entries (terms) appearing in the 
> structure file but not in the definition files.  I would like to know 
> how this came to be and what you would recommend that I do, if I wish 
> to load your data into say, a MySQL database using the Chado schema. 
>  
> We would certainly appreciate any clarification on the matter.  Thank 
> you very much! 
>  
> Regards,
>  
> Serge Gregorio packa

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