Source forge tracking system for POC--Info required
Shuly
shuly at cshl.org
Wed Oct 29 14:04:05 EST 2003
Peter, out IT guy, sais that gorgonzola is an old machine with little
memory and it would be a good idea not to use it, or use it less.
Pankaj Jaiswal wrote:
> Hi Lincoln,
>
> We already have files in several repositories on both internal and
> external CVS servers for Gramene/OBO/TAIR. I agree with you on having
> only one, personally I would like to work on gorgonzola server because
> most of the development has been done on this. Secondly, I am not that
> confident on using SF CVS, because of inconsistencies and errors.
> Probably that was Sue's concern and just now I learnt from Doreen that
> Ken also faced similar problems in the past for his CMap project.
>
>
> Pankaj
>
>
>
> Lincoln Stein wrote:
>
>> Any reason not to use Sourceforge as the primary CVS and mirror it to
>> Gorgonzola? I prefer it for security issues.
>>
>> Lincoln
>>
>>
>> On Wednesday 29 October 2003 11:16 am, Pankaj Jaiswal wrote:
>>
>>> My impression is that we will use sourceforge primarily for the bug
>>> tracking system and doing a mirror of the ontology cvs from Gorgonzola
>>> (should be done in an automated way). Simultaneously, all the ontology
>>> files are maintained on primary cvs on Gorgonzola. The developers
>>> should
>>> work on these files only.
>>>
>>> Pankaj
>>>
>>> Sue Rhee wrote:
>>>
>>>> On Wed, 29 Oct 2003, Ware, Doreen wrote:
>>>>
>>>>> Hi Pankaj,
>>>>>
>>>>> I am not sure if sorceforge is usually used for bug tracking
>>>>> purposes.
>>>>
>>>>
>>>> I know of two projects that are heavily using the bug tracking
>>>> feature of
>>>> Sorceforge: GO and GMOD.
>>>>
>>>>
>>>>> Shuly is taking care of the documentation. We will use sorceforge
>>>>> as our
>>>>> CVS repository. Shuly will be writting up the documentation. I will
>>>>> reveiw this with her at the end of the week. I do not plan on
>>>>> running a
>>>>> mirror but maintaining one repository structure. If we will be using
>>>>> Source forge then our CVS should be located there.
>>>>
>>>>
>>>> Do you think there should be a backup server, in case Sorceforge is
>>>> temporaily down etc?
>>>>
>>>> Sue
>>>>
>>>>
>>>>> Doreen
>>>>>
>>>>> -----Original Message-----
>>>>> From: Pankaj Jaiswal [mailto:pj37 at cornell.edu]
>>>>> Sent: Wednesday, October 29, 2003 10:26 AM
>>>>> To: po-dev at plantontology.org
>>>>> Subject: Re: Source forge tracking system for POC--Info required
>>>>>
>>>>>
>>>>> Hi Shuly,
>>>>>
>>>>> Wait until I hear from them, in the meantime tell them it's the same
>>>>> group.
>>>>>
>>>>> Here is what I told them in reference to those 2 questions raised by
>>>>> Sourceforge. The following statements were mentioned in the original
>>>>> grant proposal, except that we will use the Sourceforge, which we
>>>>> have
>>>>> now chosen to
>>>>> be an additional mirror site for distribution. Actually, we wanted to
>>>>> have a bug
>>>>> tracking system only, but we need to furnish all these details in
>>>>> order
>>>>> to have it.
>>>>>
>>>>>
>>>>>> 1. A technical description (at least two paragraphs in
>>>>>> length) of the software you are developing, including the
>>>>>> programming language(s) used in its development and its
>>>>>> major features.
>>>>>
>>>>>
>>>>> the ontologies will be made available both as flat file DAG-Edit
>>>>> format,
>>>>> and as
>>>>> richer RDF [http:// www.w3.org/RDF/] and DAML-OIL [http://
>>>>> www.w3.org/TR/daml+oil-reference] formats that DAG-Edit and a
>>>>> number of
>>>>> other GO
>>>>> Consortium tools can process. Diagrams used to supplement the text
>>>>> definitions
>>>>> will be downloadable in common archive formats (tar-gzip and zip).
>>>>> Although this project is not primarily directed at software
>>>>> development,
>>>>> any
>>>>>
>>>>> software developed in support of the Plant Ontology Consortium
>>>>> (http://www.plantontology.org) will be available under an open source
>>>>> license.
>>>>>
>>>>> Technical info for source forge -
>>>>> we are using tools developed by the Gene Ontology Project
>>>>> operating system: unix / linux
>>>>> programming language: perl, cgi scripts
>>>>> database: MySQL
>>>>>
>>>>>
>>>>>> 2. Details of the Open Source license (either the name of an
>>>>>> OSI-approved license, or the exact terms of the license if
>>>>>> it is not an OSI-approved license) which will be used by
>>>>>> your project.
>>>>>
>>>>>
>>>>> All ontologies, associations and software will be released to the
>>>>> public
>>>>> under
>>>>> an open source license that allows free use and distribution
>>>>> (http://www.opensource.org). Releases of ontologies will be made
>>>>> following a
>>>>> quarterly schedule as outlined in the project description.
>>>>> Releases of
>>>>> associations will follow the release schedules of TAIR and Gramene,
>>>>> software
>>>>>
>>>>> will be released as soon as it is judged minimally useable by third
>>>>> parties. The
>>>>> manner and mode of release will be as described in the project
>>>>> description. In accordance with common open source practice, all
>>>>> works
>>>>> will be copyrighted
>>>>> jointly by the members of the Plant Ontology Consortium solely for
>>>>> the
>>>>> purpose
>>>>> of protecting the integrity of the work.
>>>>
>>>>
>
>
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