[Ngasp-help] Fwd: nGASP manuscript

[Tristan Fiedler]

Does anything need to be done regarding Chengzhi's comment below?

TJF

Begin forwarded message:

From: Chengzhi Liang <liang at cshl.edu>
Date: July 18, 2008 10:25:05 AM EDT
To: "Dr. Tristan J. Fiedler" <fiedler at fit.edu>
Subject: Re: nGASP manuscript

Hi Tristan,

Thanks for the manuscript.
I think I eventually find out what's Richard(?) was talking about when  
he told me once that the genes I provided in nGASP had some  
inconsistency: some with stop codon, some without. This is because I  
used two separate Ensembl modules to build all the genes. One of them  
append stop codon at the end of CDS, but the other doesn't. I didn't  
noticed this before because I never compared the genes built by these  
two modules at the CDS level. The protein level is always the same. I  
don't know how much this affected my results, but maybe you guys want  
to know this.

Chengzhi


Dr. Tristan J. Fiedler wrote:

> Dear nGASP Participants,
>
> We thank you again for your participation in nGASP.
>
> The nGASP analysis team has now written up the results of nGASP
> as a paper, which we plan to submit to BMC Bioinformatics.
>
> As agreed, we are sending you a copy of the draft manuscript for  
> your perusal before submission.
> We would be very grateful if you can let us know if you have any
> major comments on the draft manuscript by Thursday 24th July.
>
> Comments may be sent to ngasp-help at wormbase.org <mailto:ngasp-help at wormbase.org 
> >
>
> Yours sincerely,
>
> The nGASP analysis team.
>
> =
> ------------------------------------------------------------------------
>


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