<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Does anything need to be done regarding Chengzhi's comment below?<div><br></div><div>TJF<br><div><br><div>Begin forwarded message:</div><br class="Apple-interchange-newline"><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="4" color="#000000" style="font: 14.0px Helvetica; color: #000000"><b>From: </b></font><font face="Helvetica" size="4" style="font: 14.0px Helvetica">Chengzhi Liang <<a href="mailto:liang@cshl.edu">liang@cshl.edu</a>></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="4" color="#000000" style="font: 14.0px Helvetica; color: #000000"><b>Date: </b></font><font face="Helvetica" size="4" style="font: 14.0px Helvetica">July 18, 2008 10:25:05 AM EDT</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="4" color="#000000" style="font: 14.0px Helvetica; color: #000000"><b>To: </b></font><font face="Helvetica" size="4" style="font: 14.0px Helvetica">"Dr. Tristan J. Fiedler" <<a href="mailto:fiedler@fit.edu">fiedler@fit.edu</a>></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="4" color="#000000" style="font: 14.0px Helvetica; color: #000000"><b>Subject: </b></font><font face="Helvetica" size="4" style="font: 14.0px Helvetica"><b>Re: nGASP manuscript</b></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><br></div> </div><div>Hi Tristan,<br><br>Thanks for the manuscript.<br>I think I eventually find out what's Richard(?) was talking about when he told me once that the genes I provided in nGASP had some inconsistency: some with stop codon, some without. This is because I used two separate Ensembl modules to build all the genes. One of them append stop codon at the end of CDS, but the other doesn't. I didn't noticed this before because I never compared the genes built by these two modules at the CDS level. The protein level is always the same. I don't know how much this affected my results, but maybe you guys want to know this.<br><br>Chengzhi<br><br><br>Dr. Tristan J. Fiedler wrote:<br><br><blockquote type="cite">Dear nGASP Participants,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">We thank you again for your participation in nGASP.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">The nGASP analysis team has now written up the results of nGASP<br></blockquote><blockquote type="cite">as a paper, which we plan to submit to BMC Bioinformatics.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">As agreed, we are sending you a copy of the draft manuscript for your perusal before submission. <br></blockquote><blockquote type="cite">We would be very grateful if you can let us know if you have any<br></blockquote><blockquote type="cite">major comments on the draft manuscript by Thursday 24th July.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Comments may be sent to ngasp-help@wormbase.org <<a href="mailto:ngasp-help@wormbase.org">mailto:ngasp-help@wormbase.org</a>><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Yours sincerely,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">The nGASP analysis team.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">=<br></blockquote><blockquote type="cite">------------------------------------------------------------------------<br></blockquote><blockquote type="cite"><br></blockquote><br></div></div><br></div></body></html>