[Gramene] Query: downloading BrachyCyc database

[Liya Ren]

Hi Rohan,

Here is the web site link of beta version BrachyCyc http://pathway-dev.gramene.org/gramene/brachycyc.shtml 
. As Pankaj said the data is not available for download at this time  
and we are working on to make it public in the next couple of months.  
If you are using BrachyCyc for research purpose, please cite Gramene.  
We would love to work with you on improvements and annotations if  
there is a potential collaboration .

Regards,

Liya

On Apr 11, 2010, at 1:34 PM, Rohan Patil wrote:

> Hi Pankaj,
> Thanks for getting back to me. If you can send me the link for beta  
> version that would be great. I understand the terms of your  
> disclaimer.
>
> Thanks
> Rohan
>
> On Sat, Apr 10, 2010 at 5:35 PM, Pankaj Jaiswal (OSU) <jaiswalp at science.oregonstate.edu 
> > wrote:
> Dear Rohan,
>
> We really appreciate your interest in the BrachyCyc and would be  
> happy to help you in your research. The current BrachyCyc database  
> is not yet released for public use. It is still under development  
> stage and is visible on our dev website in the beta version.  
> Therefore it is not available for download at this time. You are  
> more than welcome to use it with our disclaimer that it is a beta  
> version and the contents are subject to change when the revision  
> happens. We will not take responsibility of any lost data or bad  
> prediction of the pathway and annotation in these versions.
>
> We are actively working on making it public in the next couple of  
> months.
>
> Sincerely
> Pankaj
>
>
> On 4/8/2010 8:28 AM, Rohan Patil wrote:
> Hi,
> I am a graduate student in Chemical Engineering Department at Univ. of
> Massachusetts, Amherst. I was trying to download the free copy of the
> BrachyCyc database in BioCyc <http://www.biocyc.org/> format for local
>
> use, but the webpage is not loading ("No web page found" is the  
> result).
> Can you please help me with this. I am trying to use Pathway tools to
> figure out holes in the Brachypodium pathway.
>
> Thanks
> Rohan
>
> --
> Rohan Patil
> Graduate Research Assistant
> Department of Chemical Engineering
> University of Massachusetts Amherst
> Amherst, MA - 01003
> Phone: 413-347-0813
> E-mail: patil at ecs.umass.edu <mailto:patil at ecs.umass.edu>
>
>
>
>
>
>
>
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>
>
>
>
> -- 
> Rohan Patil
> Graduate Research Assistant
> Department of Chemical Engineering
> University of Massachusetts Amherst
> Amherst, MA - 01003
> Phone: 413-347-0813
> E-mail: patil at ecs.umass.edu
>
>
>
>
>
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> Gramene at brie4.cshl.edu
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--
Liya Ren
ren at cshl.edu

www.gramene.org
Ware Lab
Cold Spring Harbor Laboratory

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