[Gramene] Gramene link: Question

[Will Spooner]

Dear Sudhansu,

This issue is a combination of two factors;
  - Your links should point to our live site, and
  - The '|13101.m04889|pr' suffix now breaks the URL.

The correct URL for this page is therefore;

http://www.gramene.org/Oryza_sativa/Gene/Summary?db=core;g=LOC_Os01g47410.2

Or (to specify a transcript rather than a gene);

http://www.gramene.org/Oryza_sativa/Transcript/Summary?db=core;t=LOC_Os01g47410.2

Please let me know if you need any further details,

Will

On 20 Nov 2009, at 19:45, Sudhansu Dash wrote:

>
> **Already sent to: helpdesk at ensemblgenomes.org
>
> Hi,
> I am the curator of PLEXdb, the Plant and Plant Pathogen gene  
> expression
> database (www.plexdb.org) at the Iowa State University.
>
> We have been successfully linking to Gramene from our annotation  
> page for quite
> sometime using the following URL:
>
> http://dev.gramene.org/Oryza_sativa/Gene/Summary?db=core;g=LOC_Os01g47410.2 
> |13101.m04889|pr
>
> Now this gives the following error message:
>
> ##----------------------------
> "Ensembl Server Error
>
> Sorry, an error occurred while the Ensembl server was processing  
> your request
>
> Please email a report , quoting any additional information given  
> below, along
> with the URL, to helpdesk at ensemblgenomes.org
>
> The error was:
>
>    unknown (no specific information available)"
> ##----------------------------
>
> I now realize that the your url in the following formats work:
>
> http://www.gramene.org/Oryza_sativa/Gene/Summary?db=core;g=LOC_Os01g47410.2
> http://www.gramene.org/Oryza_sativa/Gene/Summary?g=LOC_Os01g47410.2
>
>
> My specific question is: Is it still possible to use
> "LOC_Os01g47410.2|13101.m04889|pr" instead of just  
> "LOC_Os01g47410.2" in the
> url.  This has practical significance/convenience for us.
>
> I would appreciate your help on this.
> In case it is helpful, this is our web page from where we provide  
> the link to
> Gramene and others.
> http://www.plexdb.org/modules/PD_probeset/annotation.php?array_name=Wheat&sequence_id=Ta.10069.1.S1_at
>
>
> Sincerely.
>
> Sudhansu Dash, Ph.D.
>
> Curator PLEXdb
> www.plexdb.org
>
>
> ------------------------
> Sudhansu Dash
>
> 1023  Crop Genome Informatics Lab
> Iowa State University
> Ames, IA  50011
>
>
> sdash<AT>iastate<DOT>edu
>
>
>
>
>
>
>
>
>
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> Gramene at brie4.cshl.edu
> http://mail.gramene.org/mailman/listinfo/gramene

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