[Gramene] Ricecyc and SorghumCyc_compound data dump

[Liya Ren]

Hi Michelle,

I have put the compound files of RiceCyc and SorghumCyc on our ftp  
site ( ftp://ftp.gramene.org/pub/gramene/pathways/ricecyc/ and ftp:// 
ftp.gramene.org/pub/gramene/pathways/sorghumcyc/ ). The format is the  
same as the one from AraCyc.

Please let me know if you have any questions about the files.

Regards,

Liya


On Jan 15, 2009, at 1:44 PM, LACY, MICHELLE [AG/1000] wrote:

> <image001.gif>
> Good Afternoon,
>
>
>
>
>
> Is it possible to download a table delimited file with compound  
> information from Ricecyc and SorghumCyc.  I noticed that TAIR  
> supplies a file called aracyc_compounds.20080611 and  
> plantcyc_compounds.20080616, which is a tab delimited text file  
> that contains the following fields:
>
>
>
> aracyc_compounds contains all compounds found in AraCyc pathways:
>
> 1. compound common name.              The common name of the compound.
>
> 2. compound synonyms.          The synonyms of the compound, joint  
> by *.
>
> 3. chemical formula.           The chemical formula of the compound.
>
> 4. smiles.                     The smiles string of the compound.
>
> 5. links.                             Links to other databases for  
> the compound, such as CAS.
>
> 6. EC.                         EC number of the reaction which  
> contains this compound either as a reactant or a product. If no EC  
> number, the AraCyc frame name for the reaction is given.
>
> 7. reaction equation.          The equation of the reaction.
>
> 8. pathway.                             The common name of the  
> pathway which contains the reaction. One pathway per line.
>
>
>
>
>
> I would like to have similar information from Ricecyc and SorghumCyc.
>
>
>
> Thanks,
>
>
>
> Michelle Lacy
>
> Monsanto Company
>
>
>
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Liya Ren

www.gramene.org
ren at cshl.edu
Cold Spring Harbor Laboratory



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