[Gramene] script to generate gene association file

[Liya Ren]

Hi Linda,

I am responsible for generating the association file and submitting to 
gene ontology database. But I think you can't use the same script since 
the script is generated for gramene protein database. Your maize 
database is different to gramene protein database schema. I dump the 
association file from gramene protein database according to the file 
format required by GOC 
http://www.geneontology.org/GO.format.annotation.shtml. It should be 
easy for you to generate a script for your maize database.

Liya

McMahan, Linda wrote:
> Hi, 
>
> I would like to generate gene association file for maize similar to the gramene gene association file shown at:
>
> http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/gene_association.gramene_oryza.gz?rev=HEAD
>
> Could you please let me know the person who generates this gramene gene association file.  I would like to contact the person about using the same script to generate maize gene association file.
>
> Thanks,
> Linda
>
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